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BaseInfo

ncRNA ID novel_zma_miR9028
Species Zea mays
Class miRNA
Genome position Chr4:241272136-241272260 [+]
Reference genome RefGen_v4
Source SRR1583942
Length 22
Mature sequence(if miRNA) 1 - UUUAGAUCUAACGUCUUUAGUU - 22
Stem-loop(if miRNA) -                       ---------------UU      A   UG   AGG   UU  UUAA
 UUUAGAUCUAACGUCUUUAGUUG                 UGAUAC UUU  CUA   ACG  CU    C
 |||||||||||||||||||||||                 |||||| |||  |||   |||  ||
 AAAUCUAGAUUGCAGAGAUUAAC                 AUUGUG AAG  GGU   UGU  GG    G
U                       UAGUAAGUUAAAUGUUU      G   GU   -GA   GU  UGGU
Stem-loop sequence UUUAGAUCUAACGUCUUUAGUUGUUUGAUACAUUUUGCUAAGGACGUUCUUUAACGUGGUGGUGUGUAGUGGUGGAAGGUGUUAUUUGUAAAUUGAAUGAUCAAUUAGAGACGUUAGAUCUAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB170004.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||||||||||||||||||||||
targets:136   AACUAAAGACGUUAGAUCUAAA   157

0.0 Sequence 7668 from Patent EP2559767 NA coding protein psRNATarget
HI409543.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||||||||||||||||||||||
targets:136   AACUAAAGACGUUAGAUCUAAA   157

0.0 Sequence 7668 from Patent EP2074227 NA coding protein psRNATarget
LQ241673.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||||||||||||||||||||||
targets:136   AACUAAAGACGUUAGAUCUAAA   157

0.0 Sequence 7668 from Patent EP2985353 NA coding protein psRNATarget
XM_008681116.2
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:3248   AACUAGAGACGUUAGAUCUAAA   3269

1.0 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020552764.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:3070   AACUAGAGACGUUAGAUCUAAA   3091

1.0 PREDICTED: Zea mays probable serine/threonine-protein kinase WNK8 (LOC103654279), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008646350.2
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:1719   AACUAGAGACGUUAGAUCUAAA   1740

1.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA NA coding protein psRNATarget
HI403274.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:125   AACUAGAGACGUUAGAUCUAAA   146

1.0 Sequence 1399 from Patent EP2074227 NA coding protein psRNATarget
JB163735.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:125   AACUAGAGACGUUAGAUCUAAA   146

1.0 Sequence 1399 from Patent EP2559767 NA coding protein psRNATarget
LQ235404.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:125   AACUAGAGACGUUAGAUCUAAA   146

1.0 Sequence 1399 from Patent EP2985353 NA coding protein psRNATarget
LQ235513.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:124   AACUAGAGACGUUAGAUCUAAA   145

1.0 Sequence 1508 from Patent EP2985353 NA coding protein psRNATarget
JB163844.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:124   AACUAGAGACGUUAGAUCUAAA   145

1.0 Sequence 1508 from Patent EP2559767 NA coding protein psRNATarget
HI403383.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||||||||||
targets:124   AACUAGAGACGUUAGAUCUAAA   145

1.0 Sequence 1508 from Patent EP2074227 NA coding protein psRNATarget
HI403224.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||=||=||||||||||||||||
targets:124   AAUUAGAGACGUUAGAUCUAAA   145

1.0 Sequence 1349 from Patent EP2074227 NA coding protein psRNATarget
JB163685.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||=||=||||||||||||||||
targets:124   AAUUAGAGACGUUAGAUCUAAA   145

1.0 Sequence 1349 from Patent EP2559767 NA coding protein psRNATarget
LQ235354.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||=||=||||||||||||||||
targets:124   AAUUAGAGACGUUAGAUCUAAA   145

1.0 Sequence 1349 from Patent EP2985353 NA coding protein psRNATarget
JB163827.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||*||||||||||||||||
targets:124   AACUAUAGACGUUAGAUCUAAA   145

1.0 Sequence 1491 from Patent EP2559767 NA coding protein psRNATarget
LQ235360.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||*||||||||||||||||
targets:124   AACUAUAGACGUUAGAUCUAAA   145

1.0 Sequence 1355 from Patent EP2985353 NA coding protein psRNATarget
JB163691.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||*||||||||||||||||
targets:124   AACUAUAGACGUUAGAUCUAAA   145

1.0 Sequence 1355 from Patent EP2559767 NA coding protein psRNATarget
HI403366.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||*||||||||||||||||
targets:124   AACUAUAGACGUUAGAUCUAAA   145

1.0 Sequence 1491 from Patent EP2074227 NA coding protein psRNATarget
LQ235496.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||*||||||||||||||||
targets:124   AACUAUAGACGUUAGAUCUAAA   145

1.0 Sequence 1491 from Patent EP2985353 NA coding protein psRNATarget
HI403230.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||*||||||||||||||||
targets:124   AACUAUAGACGUUAGAUCUAAA   145

1.0 Sequence 1355 from Patent EP2074227 NA coding protein psRNATarget
XM_008679080.2
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=|*||||||||||||||
targets:2143   AACUAGAAACGUUAGAUCUAAA   2164

2.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679083.2
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=|*||||||||||||||
targets:2134   AACUAGAAACGUUAGAUCUAAA   2155

2.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA NA coding protein psRNATarget
BT018927.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=|*||||||||||||||
targets:1166   AACUAGAAACGUUAGAUCUAAA   1187

2.0 Zea mays clone Contig55.F mRNA sequence NA coding protein psRNATarget
BT087938.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=|*||||||||||||||
targets:986   AACUAGAAACGUUAGAUCUAAA   1007

2.0 Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds NA coding protein psRNATarget
BT037068.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=|*||||||||||||||
targets:1021   AACUAGAAACGUUAGAUCUAAA   1042

2.0 Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds NA coding protein psRNATarget
HI402998.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||*|||||||
targets:176   AACUAGAGACGUUAAAUCUAAA   197

2.5 Sequence 1123 from Patent EP2074227 NA coding protein psRNATarget
JB163459.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||*|||||||
targets:176   AACUAGAGACGUUAAAUCUAAA   197

2.5 Sequence 1123 from Patent EP2559767 NA coding protein psRNATarget
LQ235128.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||*|||||||
targets:176   AACUAGAGACGUUAAAUCUAAA   197

2.5 Sequence 1123 from Patent EP2985353 NA coding protein psRNATarget
LQ238172.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||*|||||||
targets:142   AACUAGAGACGUUAAAUCUAAA   163

2.5 Sequence 4167 from Patent EP2985353 NA coding protein psRNATarget
HI406042.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||*|||||||
targets:142   AACUAGAGACGUUAAAUCUAAA   163

2.5 Sequence 4167 from Patent EP2074227 NA coding protein psRNATarget
JB166503.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  |||||=||||||||*|||||||
targets:142   AACUAGAGACGUUAAAUCUAAA   163

2.5 Sequence 4167 from Patent EP2559767 NA coding protein psRNATarget
HI403418.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||=*|=||||||||||||||||
targets:136   AAUCAGAGACGUUAGAUCUAAA   157

2.0 Sequence 1543 from Patent EP2074227 NA coding protein psRNATarget
JB163879.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||=*|=||||||||||||||||
targets:136   AAUCAGAGACGUUAGAUCUAAA   157

2.0 Sequence 1543 from Patent EP2559767 NA coding protein psRNATarget
LQ235548.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||=*|=||||||||||||||||
targets:136   AAUCAGAGACGUUAGAUCUAAA   157

2.0 Sequence 1543 from Patent EP2985353 NA coding protein psRNATarget
HI403384.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||*||=|||||||||||=||||
targets:124   AAAUAGAGACGUUAGAUUUAAA   145

2.5 Sequence 1509 from Patent EP2074227 NA coding protein psRNATarget
JB163845.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||*||=|||||||||||=||||
targets:124   AAAUAGAGACGUUAGAUUUAAA   145

2.5 Sequence 1509 from Patent EP2559767 NA coding protein psRNATarget
LQ235514.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  ||*||=|||||||||||=||||
targets:124   AAAUAGAGACGUUAGAUUUAAA   145

2.5 Sequence 1509 from Patent EP2985353 NA coding protein psRNATarget
EU955660.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  **=||||*||||||||||||=|
targets:1151   CCUUAAAUACGUUAGAUCUAGA   1172

2.5 Zea mays clone 1541282 mRNA sequence NA coding protein psRNATarget
EU957150.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  **=||||*||||||||||||=|
targets:1145   CCUUAAAUACGUUAGAUCUAGA   1166

2.5 Zea mays clone 1584138 mRNA sequence NA coding protein psRNATarget
EU957267.1
ncRNA:22   UUGAUUUCUGCAAUCUAGAUUU   1
  **=||||*||||||||||||=|
targets:1264   CCUUAAAUACGUUAGAUCUAGA   1285

2.5 Zea mays clone 1587473 mRNA sequence NA coding protein psRNATarget
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