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BaseInfo

ncRNA ID	novel_zma_miR9024
Species	Zea mays
Class	miRNA
Genome position	Chr6:59138901-59138980 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	57 - UUUCUCCCCCAUGGAUCCCCUUGG - 80
Stem-loop(if miRNA)	--                               U     A   AAGGGGAUCCAUGGGGGAGGAAUCCCCUUGU AUUCA A   ||||||||||||||||||||||||||||||| |||||   UUCCCCUAGGUACCCCCUCUUUAGGGGAACG UAAGU A GG                               U     U
Stem-loop sequence	AAGGGGAUCCAUGGGGGAGGAAUCCCCUUGUUAUUCAAAAUUGAAUUGCAAGGGGAUUUCUCCCCCAUGGAUCCCCUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974244.1	ncRNA:24   GGUUCCCCUAGGUACCCCCUCUUU   1   ||*||||||||||||||||||=|| targets:417   CCUAGGGGAUCCAUGGGGGAGGAA   440 Target Full Sequence	1.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
EU967725.1	ncRNA:24   GGUUCCCCUAGGUACCCCCUCUUU   1   ||*||||||||||||||||||=|| targets:1059   CCUAGGGGAUCCAUGGGGGAGGAA   1082 Target Full Sequence	1.5	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
NM_001148227.2	ncRNA:24   GGUUCCCCUAGGUACCCCCUCUUU   1   ||*||||||||||||||||||=|| targets:244   CCUAGGGGAUCCAUGGGGGAGGAA   267 Target Full Sequence	1.5	Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA	NA	coding protein	psRNATarget
BT041878.2	ncRNA:24   GGUUCCCCUAGGUACCCCCUCUUU   1   ||*||||||||||||||||||=|| targets:244   CCUAGGGGAUCCAUGGGGGAGGAA   267 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds	NA	coding protein	psRNATarget
BT087775.1	ncRNA:24   GGUUCCCCUAGGUACCCCCUCUUU   1   ||*||||||||||||||||||=|| targets:251   CCUAGGGGAUCCAUGGGGGAGGAA   274 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662311.2	ncRNA:24   GGUUCCCCUAGGUACCCCCUCUUU   1   ||*||||||||||||||||||=|| targets:1020   CCUAGGGGAUCCAUGGGGGAGGAA   1043 Target Full Sequence	1.5	PREDICTED: Zea mays EPIDERMAL PATTERNING FACTOR-like protein 4 (LOC103639579), mRNA	NA	coding protein	psRNATarget
HI408621.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 6746 from Patent EP2074227	NA	coding protein	psRNATarget
HI409259.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 7384 from Patent EP2074227	NA	coding protein	psRNATarget
JB169720.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 7384 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241389.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 7384 from Patent EP2985353	NA	coding protein	psRNATarget
LQ240751.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 6746 from Patent EP2985353	NA	coding protein	psRNATarget
JB169082.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 6746 from Patent EP2559767	NA	coding protein	psRNATarget
HI409814.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   *|||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAA   19 Target Full Sequence	1.0	Sequence 7939 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241944.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   *|||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAA   19 Target Full Sequence	1.0	Sequence 7939 from Patent EP2985353	NA	coding protein	psRNATarget
JB170275.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   *|||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAA   19 Target Full Sequence	1.0	Sequence 7939 from Patent EP2559767	NA	coding protein	psRNATarget