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BaseInfo

ncRNA ID novel_zma_miR9010
Species Zea mays
Class miRNA
Genome position Chr6:158668504-158668604 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 22
Mature sequence(if miRNA) 80 - GCACCAUCGGACUGUCUGGUGG - 101
Stem-loop(if miRNA) --     AUC G           -------------      G   A     C  AAA
  GCACC   G ACUGUCUGGUG             GCCCAG CUG UAGGG UC   C
  |||||   | |||||||||||             |||||| ||| ||||| ||
  CGUGG   U UGACAGACCAC             UGGGUU GAC AUCCC AG   G
CG     -CC G           GUGAUCGGUGCAG      -   A     A  CUG
Stem-loop sequence GCACCAUCGGACUGUCUGGUGGCCCAGGCUGAUAGGGCUCAAACGGUCGAACCCUAACAGUUGGGUGACGUGGCUAGUGCACCAGACAGUGUCCGGUGCGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001175661.1
ncRNA:22   GGUGGUCUGUCAGGCUACCACG   1
  =||||=|||*||||||||||||
targets:1065   UCACCGGACUGUCCGAUGGUGC   1086

2.5 Zea mays uncharacterized LOC100382977 (LOC100382977), mRNA NA coding protein psRNATarget
BT065862.1
ncRNA:22   GGUGGUCUGUCAGGCUACCACG   1
  =||||=|||*||||||||||||
targets:1065   UCACCGGACUGUCCGAUGGUGC   1086

2.5 Zea mays full-length cDNA clone ZM_BFc0155J05 mRNA, complete cds NA coding protein psRNATarget