Search result

BaseInfo

ncRNA ID	novel_zma_miR9009
Species	Zea mays
Class	miRNA
Genome position	Chr6:171571094-171571188 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	21
Mature sequence(if miRNA)	1 - UUCCUGUUUGGAUAUUUAGCU - 21
Stem-loop(if miRNA)	--     G              CA      C      UAG     AA   CUAAA AUCCAAAUAGGAAG  CUAAAA UGAUUA   UGGUG  A   ||||| ||||||||||||||  |||||| ||||||   |||||  A   GAUUU UAGGUUUGUCCUUC  GAUUUU ACUGAU   ACUAU  A UC     A              UC      C      UUA     GA
Stem-loop sequence	CUAAAGAUCCAAAUAGGAAGCACUAAAACUGAUUAUAGUGGUGAAAAAAGUAUCAAUUUAGUCACUUUUAGCUCUUCCUGUUUGGAUAUUUAGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538816.1	ncRNA:21   UCGAUUUAUAGGUUUGUCCUU   1   |||||||*|||||||=||||| targets:1316   AGCUAAAGAUCCAAAUAGGAA   1336 Target Full Sequence	2.5	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020538817.1	ncRNA:21   UCGAUUUAUAGGUUUGUCCUU   1   |||||||*|||||||=||||| targets:1293   AGCUAAAGAUCCAAAUAGGAA   1313 Target Full Sequence	2.5	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X5, mRNA	NA	coding protein	psRNATarget
BT066106.2	ncRNA:21   UCGAUUUAUAGGUUUGUCCUU   1   |||||||*||||*|||||||| targets:869   AGCUAAAGAUCCCAACAGGAA   889 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0327N02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ074373.1	ncRNA:21   UCGAUUUAUAGGUUUGUCCUU   1   |*||||||*|||||||||||= targets:41   AACUAAAUUUCCAAACAGGAG   61 Target Full Sequence	2.5	TSA: Zea mays contig10010, mRNA sequence	NA	coding protein	psRNATarget