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BaseInfo

ncRNA ID	novel_zma_miR9006
Species	Zea mays
Class	miRNA
Genome position	Chr3:220944517-220944567 [-]
Reference genome	RefGen_v4
Source	SRR1997865;SRR1997866
Length	24
Mature sequence(if miRNA)	28 - GAGGUUGGCCUCGGGCGAGACGGA - 51
Stem-loop(if miRNA)	--         -  C   C A    G   GAGGUUGGC CU GGG G GACG A   ||||||||| || ||| | |||| A   CUCCGAUCG GA CCC C CUGU C GA         A  -   A C    A
Stem-loop sequence	GAGGUUGGCCUCGGGCGAGACGGAACAUGUCCCACCCAGAGCUAGCCUCAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||||||||||||||||| targets:361   UCACGGCUCGCCCGAGGCCAACCUC   385 Target Full Sequence	0.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||||||=|||||||||| targets:681   UCACGGCUCGCCCGGGGCCAACCUC   705 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||-||||||||||||||||||| targets:761   UCACG-CUCGCCCGAGGCCAACCUC   784 Target Full Sequence	0.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   **||*||||=|||||||||||||| targets:840   CACGACUCGUCCGAGGCCAACCUC   863 Target Full Sequence	1.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-=|*||||||||=|||||||||| targets:879   UCAUGACUCGCCCGGGGCCAACCUC   903 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*|||||=||||||||||||= targets:481   UCACGGCUCGCUCGAGGCCAACCUU   505 Target Full Sequence	2.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||=|=|||||||||||| targets:241   UCACGGCUCGUCUGAGGCCAACCUC   265 Target Full Sequence	2.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*|||||||||||||||||*| targets:321   UCACGGCUCGCCCGAGGCCAACCCC   345 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGG---CAGAGCGGGCUCCGGUUGGAG   1   |=|---|-||||||=|||||||||||| targets:560   UUCACAG-CUCGCCUGAGGCCAACCUC   585 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   |*||*|||||||||||||||||*| targets:920   UACGACUCGCCCGAGGCCAACCCC   943 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   **||*||=|==||||||||||||| targets:522   CACGGCUUGUUCGAGGCCAACCUC   545 Target Full Sequence	3.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||=||||||||||||||*| targets:641   UCACGGCUUGCCCGAGGCCAACCCC   665 Target Full Sequence	2.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-=|*|||||||||||||||||*| targets:441   UCAUGGCUCGCCCGAGGCCAACCCC   465 Target Full Sequence	1.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   **|**||=|||||||||||||||| targets:162   CACAGCUUGCCCGAGGCCAACCUC   185 Target Full Sequence	1.0	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
NM_001348352.1	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||=|||||*|||||||| targets:201   UCACGGCUCGUCCGAGACCAACCUC   225 Target Full Sequence	2.5	Zea mays uncharacterized LOC100303785 (LOC100303785), mRNA	NA	coding protein	psRNATarget
XM_008661501.2	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-||*||||||||||||=|||||| targets:2917   UCACGGCUCGCCCGAGGCUAACCUC   2941 Target Full Sequence	1.5	PREDICTED: Zea mays protein ALP1-like (LOC103638649), mRNA	NA	coding protein	psRNATarget
XM_008661501.2	ncRNA:24   AG-GCAGAGCGGGCUCCGGUUGGAG   1   ||-=|*||||||||||||||*|||| targets:2877   UCAUGACUCGCCCGAGGCCACCCUC   2901 Target Full Sequence	1.5	PREDICTED: Zea mays protein ALP1-like (LOC103638649), mRNA	NA	coding protein	psRNATarget
XM_020539680.1	ncRNA:24   AGGCAGAGCGGGCUCCGGUUGGAG   1   |*|||=|||||||||*|||||||| targets:797   UACGUUUCGCCCGAGCCCAACCUC   820 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109940245 (LOC109940245), mRNA	NA	coding protein	psRNATarget