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BaseInfo

ncRNA ID novel_zma_miR9005
Species Zea mays
Class miRNA
Genome position Chr6:160612708-160612754 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 21
Mature sequence(if miRNA) 27 - CGGUGUUGACCGCCUCUGUCC - 47
Stem-loop(if miRNA) --      A    UG  --   AU
  AUAGAG CGGU  AU  UGC  G
  |||||| ||||  ||  |||  A
  UGUCUC GCCA  UG  GCG  C
CC      C    GU  UG   GA
Stem-loop sequence AUAGAGACGGUUGAUUGCAUGACAGGCGGUGUUGACCGCCUCUGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT083776.1
ncRNA:21   CCUGUCUCCGCCAGUUGUGGC   1
  ||=||||||||||||||||||
targets:1253   GGGCAGAGGCGGUCAACACCG   1273

1.0 Zea mays full-length cDNA clone ZM_BFb0039C01 mRNA, complete cds NA coding protein psRNATarget
EZ076722.1
ncRNA:21   CCUGUCUCCGCCAGUUGUGGC   1
  ||=|*||||||||||||||||
targets:38   GGGCCGAGGCGGUCAACACCG   58

2.0 TSA: Zea mays contig12359, mRNA sequence NA coding protein psRNATarget