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BaseInfo

ncRNA ID novel_zma_miR9003
Species Zea mays
Class miRNA
Genome position Chr10:102481617-102481799 [+]
Reference genome RefGen_v4
Source SRR4237222
Length 24
Mature sequence(if miRNA) 1 - AACUUCCUAGAGGAGACUGUAGGA - 24
Stem-loop(if miRNA) --             -  A                  UG              GA   AG -CG            -------G      UUGA    A
  AACUUCCUAGAGG AG CUGUAGGAAGUUAGCAUG  CAGUUAACUUCCUA  GGC  C   UAGGAAGUUAGU        GCUCGU    CCGC C
  ||||||||||||| || ||||||||||||||||||  ||||||||||||||  |||  |   ||||||||||||        ||||||    ||||
  UUGAAGGAUCUCC UC GGCAUCCUUCAAUCGUAC  GUCGAUUGAAGGAU  CCG  G   AUCCUUCAAUCG        CGAGUA    GGCG C
GA             G  -                  GU              -G   GA UAG            AAAGUCAA      ----    C
Stem-loop sequence AACUUCCUAGAGGAGACUGUAGGAAGUUAGCAUGUGCAGUUAACUUCCUAGAGGCAGCCGUAGGAAGUUAGUGGCUCGUUUGACCGCACCCGCGGAUGAGCAACUGAAAGCUAACUUCCUAGAUGAGGCCGUAGGAAGUUAGCUGUGCAUGCUAACUUCCUACGGCUGCCUCUAGGAAGUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   AGGAUGUCAGAGGAGAUCCUUCAA   1
  ||||||=**|||||||||||||||
targets:1178   UCCUACGACCUCCUCUAGGAAGUU   1201

3.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget