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BaseInfo

ncRNA ID	novel_zma_miR9001
Species	Zea mays
Class	miRNA
Genome position	Chr5:120526420-120526495 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	22
Mature sequence(if miRNA)	55 - UUUCUCCCCCAUGGAUCCCUUU - 76
Stem-loop(if miRNA)	--                             U     A   GGGGAUCCAUGGGGGAGGAAUCCCCUUGU AUUCA A   ||||||||||||||||||||||||||||| |||||   UCCCUAGGUACCCCCUCUUUAGGGGAACG UAAGU A UU                             U     U
Stem-loop sequence	GGGGAUCCAUGGGGGAGGAAUCCCCUUGUUAUUCAAAAUUGAAUUGCAAGGGGAUUUCUCCCCCAUGGAUCCCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU974244.1	ncRNA:22   UUUCCCUAGGUACCCCCUCUUU   1   *|=||||||||||||||||=|| targets:419   UAGGGGAUCCAUGGGGGAGGAA   440 Target Full Sequence	1.5	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
EU967725.1	ncRNA:22   UUUCCCUAGGUACCCCCUCUUU   1   *|=||||||||||||||||=|| targets:1061   UAGGGGAUCCAUGGGGGAGGAA   1082 Target Full Sequence	1.5	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
NM_001148227.2	ncRNA:22   UUUCCCUAGGUACCCCCUCUUU   1   *|=||||||||||||||||=|| targets:246   UAGGGGAUCCAUGGGGGAGGAA   267 Target Full Sequence	1.5	Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA	NA	coding protein	psRNATarget
BT041878.2	ncRNA:22   UUUCCCUAGGUACCCCCUCUUU   1   *|=||||||||||||||||=|| targets:246   UAGGGGAUCCAUGGGGGAGGAA   267 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds	NA	coding protein	psRNATarget
BT087775.1	ncRNA:22   UUUCCCUAGGUACCCCCUCUUU   1   *|=||||||||||||||||=|| targets:253   UAGGGGAUCCAUGGGGGAGGAA   274 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008662311.2	ncRNA:22   UUUCCCUAGGUACCCCCUCUUU   1   *|=||||||||||||||||=|| targets:1022   UAGGGGAUCCAUGGGGGAGGAA   1043 Target Full Sequence	1.5	PREDICTED: Zea mays EPIDERMAL PATTERNING FACTOR-like protein 4 (LOC103639579), mRNA	NA	coding protein	psRNATarget
LQ241389.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 7384 from Patent EP2985353	NA	coding protein	psRNATarget
HI409259.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 7384 from Patent EP2074227	NA	coding protein	psRNATarget
JB169720.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 7384 from Patent EP2559767	NA	coding protein	psRNATarget
LQ240751.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 6746 from Patent EP2985353	NA	coding protein	psRNATarget
JB169082.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 6746 from Patent EP2559767	NA	coding protein	psRNATarget
HI408621.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   ||||||||||||||||=|| targets:1   GGGAUCCAUGGGGGAGGAA   19 Target Full Sequence	1.5	Sequence 6746 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241944.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   *|||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAA   19 Target Full Sequence	1.0	Sequence 7939 from Patent EP2985353	NA	coding protein	psRNATarget
JB170275.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   *|||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAA   19 Target Full Sequence	1.0	Sequence 7939 from Patent EP2559767	NA	coding protein	psRNATarget
HI409814.1	ncRNA:19   CCCUAGGUACCCCCUCUUU   1   *|||||||||||||||||| targets:1   AGGAUCCAUGGGGGAGAAA   19 Target Full Sequence	1.0	Sequence 7939 from Patent EP2074227	NA	coding protein	psRNATarget