Search result

BaseInfo

ncRNA ID novel_zma_miR8998
Species Zea mays
Class miRNA
Genome position Chr3:223439353-223439535 [-]
Reference genome RefGen_v4
Source SRR1997865
Length 24
Mature sequence(if miRNA) 160 - AGGGAGUGUUUGGUUUAUAGGGAC - 183
Stem-loop(if miRNA) --    A           A          AC       C  A         UC         UA              G            
  AGGG GUGUUUGGUUU UAGGGACUAA  UUUAGUC CU UACUUAAUU  AUUUUAGUU  UAAAUUGUUAAAUA GGAAACUAAAAUA
  |||| ||||||||||| ||||||||||  ||||||| || |||||||||  |||||||||  |||||||||||||| ||||||||||||G
  UCCC CACAAACCAAA AUCCCUGAUU  AAAUCAG GA GUGAAUUAA  UAAAAUUAG  AUUUAAUGAUUUAU UCUUUGAUUUUGA
AA    C           G          AA       C  G         GA         GG              A            
Stem-loop sequence AGGGAGUGUUUGGUUUAUAGGGACUAAACUUUAGUCCCUAUACUUAAUUUCAUUUUAGUUUAUAAAUUGUUAAAUAGGGAAACUAAAAUAGAGUUUUAGUUUCUAUAUUUAGUAAUUUAGGGAUUAAAAUAGAAUUAAGUGGAGCGACUAAAAAUUAGUCCCUAGAAACCAAACACCCCCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ060524.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||||||||||||||||||||||||
targets:196   GUCCCUAUAAACCAAACACUCCCU   219

0.0 TSA: Zea mays contig61646, mRNA sequence NA coding protein psRNATarget
BT085047.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||||||||||||||*||||
targets:1345   GUCCCUAUAAACCAAACACCCCCU   1368

1.5 Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds NA coding protein psRNATarget
XM_020547055.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*||||||||||||||||
targets:433   GUCCCUAAAAACCAAACACUCCCU   456

1.0 PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020547054.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*||||||||||||||||
targets:435   GUCCCUAAAAACCAAACACUCCCU   458

1.0 PREDICTED: Zea mays myosin-6 (LOC103644344), transcript variant X6, mRNA NA coding protein psRNATarget
JB167174.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||||*||||||||||||||*||||
targets:294   GUCCAUAUAAACCAAACACCCCCU   317

1.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
HI406713.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||||*||||||||||||||*||||
targets:294   GUCCAUAUAAACCAAACACCCCCU   317

1.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||||*||||||||||||||*||||
targets:294   GUCCAUAUAAACCAAACACCCCCU   317

1.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
XM_020553397.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:704   GUCCCUACAAACCAAACACCCCCU   727

2.5 PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:1124   GUCCCUACAAACCAAACACCCCCU   1147

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020543841.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:1071   GUCCCUAGAAACCAAACACCCCCU   1094

2.5 PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA NA coding protein psRNATarget
BT065747.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:916   GUCCCUAGAAACCAAACACCCCCU   939

2.5 Zea mays full-length cDNA clone ZM_BFc0062G24 mRNA, complete cds NA coding protein psRNATarget
XM_008674294.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:22   GUCCCUAAAAACCAAACACCCCCU   45

2.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008674295.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:22   GUCCCUAAAAACCAAACACCCCCU   45

2.5 PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100274149), transcript variant X2, mRNA NA coding protein psRNATarget
BT019141.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||||*||||||||||||||*||||
targets:419   GUCCAUAUAAACCAAACACCCCCU   442

1.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
XM_008676281.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:44   GUCCCUACAAACCAAACACCCCCU   67

2.5 PREDICTED: Zea mays U-box domain-containing protein 14 (LOC103650716), mRNA NA coding protein psRNATarget
XM_008674147.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:29   GUCCCUAGAAACCAAACACCCCCU   52

2.5 PREDICTED: Zea mays uncharacterized LOC100272682 (TIDP2766), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020542516.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||||||*||||||||||||*||||
targets:38   GUCCCUCUAAACCAAACACCCCCU   61

2.5 PREDICTED: Zea mays NAC domain-containing protein 35 (LOC103634916), transcript variant X6, mRNA NA coding protein psRNATarget
NM_001152323.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:2086   GUCCCUAGAAACCAAACACCCCCU   2109

2.5 Zea mays uncharacterized LOC100279302 (LOC100279302), mRNA NA coding protein psRNATarget
BT053999.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||||||*|||||||||||*||||
targets:2086   GUCCCUAGAAACCAAACACCCCCU   2109

2.5 Zea mays full-length cDNA clone ZM_BFc0109O10 mRNA, complete cds NA coding protein psRNATarget
BT055601.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||=|||*|||||||||||*||||
targets:939   GUCUCUAGAAACCAAACACCCCCU   962

2.5 Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds NA coding protein psRNATarget
NM_001153051.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||=|||*|||||||||||*||||
targets:939   GUCUCUAGAAACCAAACACCCCCU   962

2.5 Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA NA coding protein psRNATarget
BT038994.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||*|=||*||=|||||||||||||
targets:1245   GUACUUAGAAGCCAAACACUCCCU   1268

2.0 Zea mays full-length cDNA clone ZM_BFb0348D04 mRNA, complete cds NA coding protein psRNATarget
NM_001147048.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  ||*|=||*||=|||||||||||||
targets:1245   GUACUUAGAAGCCAAACACUCCCU   1268

2.0 Zea mays Nudix hydrolase 23 chloroplastic (LOC100272585), mRNA NA coding protein psRNATarget
XM_008680551.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||*|||*|||||||||||*||||
targets:963   GUCACUAGAAACCAAACACCCCCU   986

2.5 PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547858.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||*|||*|||||||||||*||||
targets:1693   GUCACUAGAAACCAAACACCCCCU   1716

2.5 PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA NA coding protein psRNATarget
BT019277.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  **|**||||||||||||||||=||
targets:744   AGCGAUAUAAACCAAACACUCUCU   767

1.5 Zea mays clone Contig950.F mRNA sequence NA coding protein psRNATarget
BT043130.1
ncRNA:22   GGGAUAUUUGGUUUGUGAGGGA   1
  |==|*|||||||||||||||=|
targets:1   CUUUCUAAACCAAACACUCCUU   22

2.5 Zea mays full-length cDNA clone ZM_BFc0104D17 mRNA, complete cds NA coding protein psRNATarget
NM_001155848.2
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  **|==|*|||||||||||||||=|
targets:10   CGCUUUCUAAACCAAACACUCCUU   33

2.5 Zea mays Chaperone protein dnaJ 15 (pco093020), mRNA NA coding protein psRNATarget
EU962897.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  **|==|*|||||||||||||||=|
targets:11   CGCUUUCUAAACCAAACACUCCUU   34

2.5 Zea mays clone 246360 chaperone protein dnaJ 15 mRNA, complete cds NA coding protein psRNATarget
EZ107034.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  **|**||||||||||||||||=||
targets:803   AGCGAUAUAAACCAAACACUCUCU   826

1.5 TSA: Zea mays contig42692, mRNA sequence NA coding protein psRNATarget
EU957896.1
ncRNA:24   CAGGGAUAUUUGGUUUGUGAGGGA   1
  |||*=||*|||||||||||*||||
targets:1395   GUCGUUAGAAACCAAACACCCCCU   1418

2.5 Zea mays clone 1630391 mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.