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BaseInfo

ncRNA ID	novel_zma_miR8997
Species	Zea mays
Class	miRNA
Genome position	Chr5:76222746-76222833 [+]
Reference genome	RefGen_v4
Source	SRR4237222
Length	21
Mature sequence(if miRNA)	1 - UACCUCAAUACACAUGGAUUG - 21
Stem-loop(if miRNA)	--                          A    U      A UU   UACCUCAAUACACAUGGAUUGAGGUG AUUG AGUGUA G  A   |||||||||||||||||||||||||| |||| |||||| |   AUGGAGUUAUGUGUACCUAACUCCAC UAAC UCACAU C  G AA                          C    C      A UU
Stem-loop sequence	UACCUCAAUACACAUGGAUUGAGGUGAAUUGUAGUGUAAGUUAGUUCAUACACUCCAAUCCACCUCAAUCCAUGUGUAUUGAGGUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403033.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =|||||||||||||||||||= targets:15   UAAUCCAUGUGUAUUGAGGUG   35 Target Full Sequence	1.0	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
JB163494.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =|||||||||||||||||||= targets:15   UAAUCCAUGUGUAUUGAGGUG   35 Target Full Sequence	1.0	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =|||||||||||||||||||= targets:15   UAAUCCAUGUGUAUUGAGGUG   35 Target Full Sequence	1.0	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008674966.2	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   |||||||||||||||||*||= targets:3220   CAAUCCAUGUGUAUUGAAGUG   3240 Target Full Sequence	2.5	PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674967.2	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   |||||||||||||||||*||= targets:3217   CAAUCCAUGUGUAUUGAAGUG   3237 Target Full Sequence	2.5	PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674970.2	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   |||||||||||||||||*||= targets:3188   CAAUCCAUGUGUAUUGAAGUG   3208 Target Full Sequence	2.5	PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008674971.2	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   |||||||||||||||||*||= targets:3184   CAAUCCAUGUGUAUUGAAGUG   3204 Target Full Sequence	2.5	PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008674972.2	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   |||||||||||||||||*||= targets:3149   CAAUCCAUGUGUAUUGAAGUG   3169 Target Full Sequence	2.5	PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008674973.2	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   |||||||||||||||||*||= targets:2754   CAAUCCAUGUGUAUUGAAGUG   2774 Target Full Sequence	2.5	PREDICTED: Zea mays leunig-related1 (LOC100383414), transcript variant X10, mRNA	NA	coding protein	psRNATarget
EU942746.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   |||||||||||||||||*||= targets:352   CAAUCCAUGUGUAUUGAUGUG   372 Target Full Sequence	2.5	Zea mays clone 1533321 mRNA sequence	NA	coding protein	psRNATarget
XM_020540490.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:1039   CAAUCCAUGUAUAUUGAGGUG   1059 Target Full Sequence	2.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540489.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:989   CAAUCCAUGUAUAUUGAGGUG   1009 Target Full Sequence	2.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065432.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:958   CAAUCCAUGUAUAUUGAGGUG   978 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0153M09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153718.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:958   CAAUCCAUGUAUAUUGAGGUG   978 Target Full Sequence	2.5	Zea mays RNA polymerase II Rpb4 core protein (umc1549a), mRNA	NA	coding protein	psRNATarget
EU953864.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:948   CAAUCCAUGUAUAUUGAGGUG   968 Target Full Sequence	2.5	Zea mays clone 1447962 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
EU959927.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:973   CAAUCCAUGUAUAUUGAGGUG   993 Target Full Sequence	2.5	Zea mays clone 220699 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
AY109209.2	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:935   CAAUCCAUGUAUAUUGAGGUG   955 Target Full Sequence	2.5	Zea mays PCO083694 mRNA sequence	NA	coding protein	psRNATarget
XM_020548227.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:745   CAAUCCAUGUAUAUUGAGGUG   765 Target Full Sequence	2.5	PREDICTED: Zea mays DNA-directed RNA polymerase III subunit RPC9-like (LOC109943977), mRNA	NA	coding protein	psRNATarget
XM_020548228.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:694   CAAUCCAUGUAUAUUGAGGUG   714 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109943978 (LOC109943978), mRNA	NA	coding protein	psRNATarget
XM_020548226.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:667   CAAUCCAUGUAUAUUGAGGUG   687 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939175 (LOC109939175), mRNA	NA	coding protein	psRNATarget
EZ089181.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||||||||*|||||||||= targets:353   CAAUCCAUGUAUAUUGAGGUG   373 Target Full Sequence	2.5	TSA: Zea mays contig24827, mRNA sequence	NA	coding protein	psRNATarget
HI403027.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =|||||||||||||||||*|| targets:15   UAAUCCAUGUGUAUUGAGAUA   35 Target Full Sequence	1.5	Sequence 1152 from Patent EP2074227	NA	coding protein	psRNATarget
JB163488.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =|||||||||||||||||*|| targets:15   UAAUCCAUGUGUAUUGAGAUA   35 Target Full Sequence	1.5	Sequence 1152 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235157.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =|||||||||||||||||*|| targets:15   UAAUCCAUGUGUAUUGAGAUA   35 Target Full Sequence	1.5	Sequence 1152 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235208.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =||||||||||||||||||*| targets:15   UAAUCCAUGUGUAUUGAGGCA   35 Target Full Sequence	1.5	Sequence 1203 from Patent EP2985353	NA	coding protein	psRNATarget
JB163539.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =||||||||||||||||||*| targets:15   UAAUCCAUGUGUAUUGAGGCA   35 Target Full Sequence	1.5	Sequence 1203 from Patent EP2559767	NA	coding protein	psRNATarget
HI403078.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =||||||||||||||||||*| targets:15   UAAUCCAUGUGUAUUGAGGCA   35 Target Full Sequence	1.5	Sequence 1203 from Patent EP2074227	NA	coding protein	psRNATarget
EZ082536.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   =|||||||||||||||||*|= targets:36   UAAUCCAUGUGUAUUGAGAUG   56 Target Full Sequence	2.5	TSA: Zea mays contig18179, mRNA sequence	NA	coding protein	psRNATarget
HI403198.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||=||*||||||||||||= targets:15   CAAUUCACGUGUAUUGAGGUG   35 Target Full Sequence	3.0	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
JB163659.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||=||*||||||||||||= targets:15   CAAUUCACGUGUAUUGAGGUG   35 Target Full Sequence	3.0	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:21   GUUAGGUACACAUAACUCCAU   1   ||||=||*||||||||||||= targets:15   CAAUUCACGUGUAUUGAGGUG   35 Target Full Sequence	3.0	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget