Search result

BaseInfo

ncRNA ID	osa-miRf10496-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - CGAUGAGCGCGAACAUGGUGGA - NA
Stem-loop(if miRNA)	A   -  U       G        UG  U    G  A      AUUCC   UC CG CGA UC CGCCAUG UCGUGCUC  CG GCGC UC AUGGCC     CUC  A || ||| || ||||||| ||||||||  || |||| || ||||||     |||  C GC GUU AG GUGGUAC AGCGCGAG  GC CGCG AG UGCUGG     GAG  C   C   C  -       A        UA  U    A  A      --GCU   CU
Stem-loop sequence	CGACGAUCUCGCCAUGGUCGUGCUCUGCGUGCGCGUCAAUGGCCAUUCCCUCUCACCUCGAGUCGGGUCGUAGAAGCGCUCGAUGAGCGCGAACAUGGUGGACUUGCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773770.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   |||||||||||||||||||||| targets:2185   UCCACCAUGUUCGCGCUCAUCG   2206 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group ABC transporter B family member 19-like (LOC107276580), mRNA	ABC transporter B family member 19-like(LOC107276580)	coding protein	psRNATarget
XM_015781351.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   |||=||=||||||||||||||* targets:4458   UCCGCCGUGUUCGCGCUCAUCC   4479 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable purine permease 11 (LOC9267767), transcript variant X5, mRNA	probable purine permease 11(LOC9267767)	coding protein	psRNATarget
XM_015781352.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   |||=||=||||||||||||||* targets:3931   UCCGCCGUGUUCGCGCUCAUCC   3952 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable purine permease 11 (LOC9267767), transcript variant X6, mRNA	probable purine permease 11(LOC9267767)	coding protein	psRNATarget
XM_015781347.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   |||=||=||||||||||||||* targets:4458   UCCGCCGUGUUCGCGCUCAUCC   4479 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable purine permease 11 (LOC9267767), transcript variant X1, mRNA	probable purine permease 11(LOC9267767)	coding protein	psRNATarget
AK060241.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   |||=||=||||||||||||||* targets:870   UCCGCCGUGUUCGCGCUCAUCC   891 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-003-F02, full insert sequence	NA	coding protein	psRNATarget
XM_015781350.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   |||=||=||||||||||||||* targets:710   UCCGCCGUGUUCGCGCUCAUCC   731 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable purine permease 11 (LOC9267767), transcript variant X4, mRNA	probable purine permease 11(LOC9267767)	coding protein	psRNATarget
XM_015794067.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   *=|=||||||||||*||||||| targets:331   CUCGCCAUGUUCGCCCUCAUCG   352 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tetraspanin-8 (LOC4345701), mRNA	tetraspanin-8(LOC4345701)	coding protein	psRNATarget
AK110630.1	ncRNA:22   AGGUGGUACAAGCGCGAGUAGC   1   *=|=||||||||||*||||||| targets:323   CUCGCCAUGUUCGCCCUCAUCG   344 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-169-B08, full insert sequence	NA	coding protein	psRNATarget