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BaseInfo

ncRNA ID	novel_zma_miR8974
Species	Zea mays
Class	miRNA
Genome position	Chr5:191240442-191240556 [+]
Reference genome	RefGen_v4
Source	SRR4237222;SRR4237226
Length	21
Mature sequence(if miRNA)	95 - AGGUUAUAAUCUCAAACAAAC - 115
Stem-loop(if miRNA)	--UC     GA        A  G               C          GA     C     GUUUG  AUUAUAAU UG CCAGAUUAUAUAAUC AACAAUUUUU  ACUAA A     |||||  |||||||| || ||||||||||||||| ||||||||||  ||||| C     CAAAC  UAAUAUUG AC GGUCUAAUAUAUUAG UUGUUAAAAA  UGAUU A CAAA     UC        G  A               A          AA     C
Stem-loop sequence	UCGUUUGGAAUUAUAAUAUGGCCAGAUUAUAUAAUCCAACAAUUUUUGAACUAACACACUUAGUAAAAAAAUUGUUAGAUUAUAUAAUCUGGACAGGUUAUAAUCUCAAACAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT038339.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:1632   GUUUGUUUGAGAUUAUAAUCU   1652 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0227N03 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664498.2	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:3   GUUUGUUUGAGAUUAUAAUCU   23 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103641129 (LOC103641129), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY107155.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:573   GUUUGUUUGAGAUUAUAAUCU   593 Target Full Sequence	1.5	Zea mays PCO068737 mRNA sequence	NA	coding protein	psRNATarget
JB163884.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:8   GUUUGUUUGAGAUUAUAAUCU   28 Target Full Sequence	1.5	Sequence 1548 from Patent EP2559767	NA	coding protein	psRNATarget
JB163768.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:8   GUUUGUUUGAGAUUAUAAUCU   28 Target Full Sequence	1.5	Sequence 1432 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235553.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:8   GUUUGUUUGAGAUUAUAAUCU   28 Target Full Sequence	1.5	Sequence 1548 from Patent EP2985353	NA	coding protein	psRNATarget
HI403307.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:8   GUUUGUUUGAGAUUAUAAUCU   28 Target Full Sequence	1.5	Sequence 1432 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235437.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:8   GUUUGUUUGAGAUUAUAAUCU   28 Target Full Sequence	1.5	Sequence 1432 from Patent EP2985353	NA	coding protein	psRNATarget
HI403423.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:8   GUUUGUUUGAGAUUAUAAUCU   28 Target Full Sequence	1.5	Sequence 1548 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239186.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:1   GUUUGUUUGAGAUUAUAAUCU   21 Target Full Sequence	1.5	Sequence 5181 from Patent EP2985353	NA	coding protein	psRNATarget
JB167517.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:1   GUUUGUUUGAGAUUAUAAUCU   21 Target Full Sequence	1.5	Sequence 5181 from Patent EP2559767	NA	coding protein	psRNATarget
HI407056.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:1   GUUUGUUUGAGAUUAUAAUCU   21 Target Full Sequence	1.5	Sequence 5181 from Patent EP2074227	NA	coding protein	psRNATarget
EZ095263.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||||||||||||||||=|| targets:68   GUUUGUUUGAGAUUAUAAUCU   88 Target Full Sequence	1.5	TSA: Zea mays contig30916, mRNA sequence	NA	coding protein	psRNATarget
LQ235122.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   *|||||||||||||||||=|| targets:19   AUUUGUUUGAGAUUAUAAUCU   39 Target Full Sequence	1.5	Sequence 1117 from Patent EP2985353	NA	coding protein	psRNATarget
JB163453.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   *|||||||||||||||||=|| targets:19   AUUUGUUUGAGAUUAUAAUCU   39 Target Full Sequence	1.5	Sequence 1117 from Patent EP2559767	NA	coding protein	psRNATarget
HI402992.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   *|||||||||||||||||=|| targets:19   AUUUGUUUGAGAUUAUAAUCU   39 Target Full Sequence	1.5	Sequence 1117 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008675928.2	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||*|||||||||||||=|| targets:1871   GUUUAUUUGAGAUUAUAAUCU   1891 Target Full Sequence	2.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 4.3 (LOC103650334), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551104.1	ncRNA:21   CAAACAAACUCUAAUAUUGGA   1   ||||*|||||||||||||=|| targets:1854   GUUUAUUUGAGAUUAUAAUCU   1874 Target Full Sequence	2.5	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 4.3 (LOC103650334), transcript variant X2, mRNA	NA	coding protein	psRNATarget