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BaseInfo

ncRNA ID	novel_zma_miR8969
Species	Zea mays
Class	miRNA
Genome position	Chr4:126650114-126650201 [+]
Reference genome	RefGen_v4
Source	SRR4237222;SRR4237224;SRR4237227
Length	24
Mature sequence(if miRNA)	1 - AACUUGUCACACUUUGUCUAACUU - 24
Stem-loop(if miRNA)	-AAC    --              CUUUUU UG  UAUGGUUGGUUC     UUGU  CACACUUUGUCUAA      C  GC            U     ||||  ||||||||||||||      |  ||            U     AACA  GUGUGAAACAGAUU      A  AU            C GAUU    CC              ----CC --  CAGUGGAUUUAA
Stem-loop sequence	AACUUGUCACACUUUGUCUAACUUUUUCUGGCUAUGGUUGGUUCUUCAAUUUAGGUGACUAACCUUAGACAAAGUGUGCCACAAUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163881.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1545 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235574.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1569 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235461.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1456 from Patent EP2985353	NA	coding protein	psRNATarget
HI403444.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1569 from Patent EP2074227	NA	coding protein	psRNATarget
HI403331.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1456 from Patent EP2074227	NA	coding protein	psRNATarget
HI403420.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1545 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235550.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1545 from Patent EP2985353	NA	coding protein	psRNATarget
JB163792.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1456 from Patent EP2559767	NA	coding protein	psRNATarget
JB163905.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:84   AAGUUAGACAAAGUGUGGCAAGUU   107 Target Full Sequence	1.5	Sequence 1569 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020553369.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||=|||||| targets:154   AAGUUAGACAAAGUGUGGCAAGUU   177 Target Full Sequence	1.5	PREDICTED: Zea mays gamma-secretase subunit APH-1B (LOC100283316), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163718.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1382 from Patent EP2559767	NA	coding protein	psRNATarget
HI403258.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1383 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235388.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1383 from Patent EP2985353	NA	coding protein	psRNATarget
JB163720.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1384 from Patent EP2559767	NA	coding protein	psRNATarget
JB163719.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1383 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235555.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1550 from Patent EP2985353	NA	coding protein	psRNATarget
HI403436.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1561 from Patent EP2074227	NA	coding protein	psRNATarget
HI403297.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1422 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235427.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1422 from Patent EP2985353	NA	coding protein	psRNATarget
HI403260.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1385 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235390.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1385 from Patent EP2985353	NA	coding protein	psRNATarget
HI403259.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1384 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235385.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1380 from Patent EP2985353	NA	coding protein	psRNATarget
JB163897.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1561 from Patent EP2559767	NA	coding protein	psRNATarget
HI403256.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1381 from Patent EP2074227	NA	coding protein	psRNATarget
HI403255.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1380 from Patent EP2074227	NA	coding protein	psRNATarget
HI403377.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1502 from Patent EP2074227	NA	coding protein	psRNATarget
HI403425.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1550 from Patent EP2074227	NA	coding protein	psRNATarget
JB163716.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1380 from Patent EP2559767	NA	coding protein	psRNATarget
JB163721.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1385 from Patent EP2559767	NA	coding protein	psRNATarget
JB163758.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1422 from Patent EP2559767	NA	coding protein	psRNATarget
JB163886.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1550 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235566.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1561 from Patent EP2985353	NA	coding protein	psRNATarget
HI403257.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1382 from Patent EP2074227	NA	coding protein	psRNATarget
JB163838.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1502 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235386.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1381 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235389.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1384 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235507.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1502 from Patent EP2985353	NA	coding protein	psRNATarget
JB163717.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1381 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235387.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:84   AAGUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1382 from Patent EP2985353	NA	coding protein	psRNATarget
EZ052567.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:553   AAGUUAGGCAAAGUGUGGCAAGUU   576 Target Full Sequence	2.5	TSA: Zea mays contig53688, mRNA sequence	NA	coding protein	psRNATarget
EU960765.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:552   AAGUUAGGCAAAGUGUGGCAAGUU   575 Target Full Sequence	2.5	Zea mays clone 228396 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020541969.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||=|||||| targets:1234   AAGUUAGGCAAAGUGUGGCAAGUU   1257 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (AY109699), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU964699.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||||||||||||||||*|| targets:990   AAGUUAGACAAAGUGUGACAAUUU   1013 Target Full Sequence	1.5	Zea mays clone 280932 mRNA sequence	NA	coding protein	psRNATarget
LQ239488.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||||||||=|||||*||||||||| targets:53   AAGUUAGAUAAAGUAUGACAAGUU   76 Target Full Sequence	2.5	Sequence 5483 from Patent EP2985353	NA	coding protein	psRNATarget
HI407358.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||||||||=|||||*||||||||| targets:53   AAGUUAGAUAAAGUAUGACAAGUU   76 Target Full Sequence	2.5	Sequence 5483 from Patent EP2074227	NA	coding protein	psRNATarget
JB167819.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||||||||=|||||*||||||||| targets:53   AAGUUAGAUAAAGUAUGACAAGUU   76 Target Full Sequence	2.5	Sequence 5483 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008676978.2	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||||||||=|||||*||||||||| targets:797   AAGUUAGAUAAAGUAUGACAAGUU   820 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103651359), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008676977.2	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||||||||=|||||*||||||||| targets:903   AAGUUAGAUAAAGUAUGACAAGUU   926 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103651359), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676976.2	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||||||||=|||||*||||||||| targets:907   AAGUUAGAUAAAGUAUGACAAGUU   930 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103651359), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001176333.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||*|||||| targets:1114   AAGUUAGGCAAAGUGUGUCAAGUU   1137 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383696 (LOC100383696), mRNA	NA	coding protein	psRNATarget
BT068062.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||*|||||| targets:1114   AAGUUAGGCAAAGUGUGUCAAGUU   1137 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0050D05 mRNA, complete cds	NA	coding protein	psRNATarget
EU964450.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   |||||||=|||||||||*|||||| targets:1095   AAGUUAGGCAAAGUGUGUCAAGUU   1118 Target Full Sequence	2.5	Zea mays clone 278961 pectinesterase inhibitor domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ235569.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||*||||=|||||||||=|||||| targets:84   AACUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1564 from Patent EP2985353	NA	coding protein	psRNATarget
HI403439.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||*||||=|||||||||=|||||| targets:84   AACUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1564 from Patent EP2074227	NA	coding protein	psRNATarget
JB163900.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||*||||=|||||||||=|||||| targets:84   AACUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1564 from Patent EP2559767	NA	coding protein	psRNATarget
JB163819.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||*||||=|||||||||=|||||| targets:84   AAAUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1483 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235488.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||*||||=|||||||||=|||||| targets:84   AAAUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1483 from Patent EP2985353	NA	coding protein	psRNATarget
HI403358.1	ncRNA:24   UUCAAUCUGUUUCACACUGUUCAA   1   ||*||||=|||||||||=|||||| targets:84   AAAUUAGGCAAAGUGUGGCAAGUU   107 Target Full Sequence	2.5	Sequence 1483 from Patent EP2074227	NA	coding protein	psRNATarget