Search result

BaseInfo

ncRNA ID novel_zma_miR8961
Species Zea mays
Class miRNA
Genome position Chr3:232769883-232769976 [-]
Reference genome RefGen_v4
Source SRR1997865;SRR1997866
Length 24
Mature sequence(if miRNA) 71 - ACCGGACUGUUCGGUGGCCCAGAA - 94
Stem-loop(if miRNA) --       --         -    AGA  A AGAAGCUCCAACGGUCGA
  ACCGGAC  UGUUCGGUG GCCC   AG C                  A
  |||||||  ||||||||| ||||   || |
  UGGCCUG  ACAGGCCAC CGGG   GG U                  C
GG       UG         G    --C  - ACAGUGGGCUGGCAAUCC
Stem-loop sequence ACCGGACUGUUCGGUGGCCCAGAAGACAGAAGCUCCAACGGUCGAACCCUAACGGUCGGGUGACAUGGCGGGCGCACCGGACAGUGUCCGGUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT038885.1
ncRNA:24   AAG---ACCCGGUGGCUUGUCAGGCCA   1
  *||---||*|||||||=||||||||||
targets:1024   GUCCGAUGCGCCACCGGACAGUCCGGU   1050

2.5 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   AAG---ACCCGGUGGCUUGUCAGGCCA   1
  *||---||*|||||||=||||||||||
targets:1395   GUCCGAUGCGCCACCGGACAGUCCGGU   1421

2.5 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget