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BaseInfo

ncRNA ID novel_zma_miR8946
Species Zea mays
Class miRNA
Genome position Chr4:119253610-119253679 [-]
Reference genome RefGen_v4
Source SRR4237222
Length 22
Mature sequence(if miRNA) 49 - UGGGACCACUUCGUUUGUACGA - 70
Stem-loop(if miRNA) --U         -    UU   -      - --A   G
   GGGACCACU UCGU  GUA CGACCG G   CCG U
   ||||||||| ||||  ||| |||||| |   |||
   CCCUGGUGA GGCG  CGU GUUGGU C   GGU G
UCG         U    -U   A      G AGC   A
Stem-loop sequence UGGGACCACUUCGUUUGUACGACCGGACCGGUGAUGGCGACGUGGUUGAUGCUGCGGUAGUGGUCCCGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU952163.1
ncRNA:22   AGCAUGUUUGCUUCACCAGGGU   1
  |*||||||||*|||||||||||
targets:1390   UGGUACAAACAAAGUGGUCCCA   1411

1.5 Zea mays clone 1213939 mRNA sequence NA coding protein psRNATarget
EU952108.1
ncRNA:22   AGCAUGUUUGCUUCACCAGGGU   1
  |*||=|||||*|||||||||||
targets:962   UGGUGCAAACAAAGUGGUCCCA   983

2.5 Zea mays clone 1165343 mRNA sequence NA coding protein psRNATarget