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BaseInfo

ncRNA ID novel_zma_miR8942
Species Zea mays
Class miRNA
Genome position Chr3:222663068-222663164 [+]
Reference genome RefGen_v4
Source SRR1997865;SRR5451003;SRR1997866
Length 24
Mature sequence(if miRNA) 74 - AAUUCACUGGACUGUUCGGUGGUG - 97
Stem-loop(if miRNA) --G        U         --  CAUCCACGACGAACUCGUCGCUCU
   CACCGGAC GUCCGGUGA  GU                        C
   |||||||| |||||||||  ||                        G
   GUGGCUUG CAGGUCACU  AC                        G
GUG        U         UA  AUCGGUGCAGUGGAAAAAGCAAAG
Stem-loop sequence GCACCGGACUGUCCGGUGAGUCAUCCACGACGAACUCGUCGCUCUCGGGAAACGAAAAAGGUGACGUGGCUACAAUUCACUGGACUGUUCGGUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT086229.2
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  *|||||||=|||||||=|||||||
targets:652   AACCACCGGACAGUCCGGUGAAUU   675

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
JB169871.1
ncRNA:24   GUG-----GUGGCUUGUCAGGUCACUUAA   1
  |||-----|||||=|||||||=|||||||
targets:10   CACUGGCACACCGGACAGUCCGGUGAAUU   38

2.5 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
HI409410.1
ncRNA:24   GUG-----GUGGCUUGUCAGGUCACUUAA   1
  |||-----|||||=|||||||=|||||||
targets:10   CACUGGCACACCGGACAGUCCGGUGAAUU   38

2.5 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   GUG-----GUGGCUUGUCAGGUCACUUAA   1
  |||-----|||||=|||||||=|||||||
targets:10   CACUGGCACACCGGACAGUCCGGUGAAUU   38

2.5 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
U41079.1
ncRNA:24   GUG-GUGGCUUGUCAGGUCACUUAA   1
  *||-|||||=|||||||=|||||||
targets:28   GACUCACCGGACAGUCCGGUGAAUU   52

2.5 Zea mays copia-type retroelement PREM-2, partial sequence NA coding protein psRNATarget
BT069074.2
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |*=|||||=|||||||=|||||||
targets:685   CUUCACCGGACAGUCCGGUGAAUU   708

2.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:605   CAC-ACCGGACAGUCCGGUGAAUU   627

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:741   CAC-ACCGGACAGUCCGGUGAAUU   763

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:741   CAC-ACCGGACAGUCCGGUGAAUU   763

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT083610.2
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:701   CAC-ACCGGACAGUCCGGUGAAUU   723

2.5 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:702   CAC-ACCGGACAGUCCGGUGAAUU   724

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:702   CAC-ACCGGACAGUCCGGUGAAUU   724

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:566   CAC-ACCGGACAGUCCGGUGAAUU   588

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:566   CAC-ACCGGACAGUCCGGUGAAUU   588

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
EU940831.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:414   CAC-ACCGGACAGUCCGGUGAAUU   436

2.5 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  |||-||||=|||||||=|||||||
targets:4614   CAC-ACCGGACAGUCCGGUGAAUU   4636

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
JB170098.1
ncRNA:21   GUGGCUUGUCAGGUCACUUAA   1
  |||||=|||||||=|||||||
targets:1   CACCGGACAGUCCGGUGAAUU   21

2.5 Sequence 7762 from Patent EP2559767 NA coding protein psRNATarget
HI409637.1
ncRNA:21   GUGGCUUGUCAGGUCACUUAA   1
  |||||=|||||||=|||||||
targets:1   CACCGGACAGUCCGGUGAAUU   21

2.5 Sequence 7762 from Patent EP2074227 NA coding protein psRNATarget
LQ241767.1
ncRNA:21   GUGGCUUGUCAGGUCACUUAA   1
  |||||=|||||||=|||||||
targets:1   CACCGGACAGUCCGGUGAAUU   21

2.5 Sequence 7762 from Patent EP2985353 NA coding protein psRNATarget
BT061709.2
ncRNA:24   GUG-----GUGGCUUGUCAGGUCACUUAA   1
  |=|-----|||||=|||||||=|||||||
targets:821   CGCUGGUGCACCGGACAGUCCGGUGAAUU   849

2.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   GUG-----GUGGCUUGUCAGGUCACUUAA   1
  |=|-----|||||=|||||||=|||||||
targets:821   CGCUGGUGCACCGGACAGUCCGGUGAAUU   849

2.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
HI409990.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  ***|||||=||||||||*||||||
targets:36   GUGCACCGGACAGUCCAAUGAAUU   59

2.5 Sequence 8115 from Patent EP2074227 NA coding protein psRNATarget
JB170451.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  ***|||||=||||||||*||||||
targets:36   GUGCACCGGACAGUCCAAUGAAUU   59

2.5 Sequence 8115 from Patent EP2559767 NA coding protein psRNATarget
LQ242120.1
ncRNA:24   GUGGUGGCUUGUCAGGUCACUUAA   1
  ***|||||=||||||||*||||||
targets:36   GUGCACCGGACAGUCCAAUGAAUU   59

2.5 Sequence 8115 from Patent EP2985353 NA coding protein psRNATarget
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