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BaseInfo

ncRNA ID	novel_zma_miR8941
Species	Zea mays
Class	miRNA
Genome position	Chr4:147812197-147812392 [-]
Reference genome	RefGen_v4
Source	SRR4237222
Length	24
Mature sequence(if miRNA)	1 - UAUGUGAACCAAACAGCACCUGAG - 24
Stem-loop(if miRNA)	--G      C            -AAAUA      A     -C       AUGA    --     -GU   -AG     AA    - UG  ----     U    A    AGGUGU GUUUGGUUCACA      UAACGU AAUGG  AACAAUA    UUAC  UGGCG   AAU   GUUUG  UAGG C  GU    AUCAG UUCU G    |||||| ||||||||||||      |||||| |||||  |||||||    ||||  |||||   |||   |||||  |||| |  ||    ||||| |||| U    UCCACG CAAACCAAGUGU      GUUGUA UUGCC  UUGUUAU    AAUG  AUUGU   UUA   CAAAC  AUUC G  UA    UAGUC AAGG G GAG      A            AUAAAC      C     AU       ----    UU     AGU   GUA     AA    A GU  GCAU     U    U
Stem-loop sequence	GAGGUGUCGUUUGGUUCACAAAAUAUAACGUAAAUGGCAACAAUAAUGAUUACUGGCGGUAAUAGGUUUGAAUAGGCUGGUAUCAGUUUCUAGUGUGGAAUCUGAUUACGAUUGGACUUAAACAAACAUGAUUUGAUGUUAUUGUAAUAUUGUUUACCGUUCAUGUUGCAAAUAUGUGAACCAAACAGCACCUGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019235.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||||||||||||||||| targets:135   CUUAGGUGCUGUUUGGUUCACAUA   158 Target Full Sequence	0.0	Zea mays clone Contig908.F mRNA sequence	NA	coding protein	psRNATarget
BT055676.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||||||||||||||||| targets:2246   CUUAGGUGCUGUUUGGUUCACAUA   2269 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0101E03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154302.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||||||||||||||||| targets:2262   CUUAGGUGCUGUUUGGUUCACAUA   2285 Target Full Sequence	0.0	Zea mays PCO063726_ov (IDP142), mRNA	NA	coding protein	psRNATarget
EU956566.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||||||||||||||||| targets:2263   CUUAGGUGCUGUUUGGUUCACAUA   2286 Target Full Sequence	0.0	Zea mays clone 1566749 SLT1 protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676395.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||||||||||||||||| targets:2452   CUUAGGUGCUGUUUGGUUCACAUA   2475 Target Full Sequence	0.0	PREDICTED: Zea mays PCO063726_ov (IDP142), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU942786.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =|=||||||||||||||||||||| targets:166   UUUAGGUGCUGUUUGGUUCACAUA   189 Target Full Sequence	0.0	Zea mays clone 1536686 mRNA sequence	NA	coding protein	psRNATarget
EZ051347.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   |||||||||*|||||||||||||| targets:61   CUCAGGUGCCGUUUGGUUCACAUA   84 Target Full Sequence	1.0	TSA: Zea mays contig52467, mRNA sequence	NA	coding protein	psRNATarget
XM_008656774.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||*|||||||||||||| targets:905   CUUAGGUGCCGUUUGGUUCACAUA   928 Target Full Sequence	1.0	PREDICTED: Zea mays beta-hydroxyacyl-ACP dehydratase (LOC100283232), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT063743.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||*|||||||||||||| targets:875   CUUAGGUGCCGUUUGGUUCACAUA   898 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0102O24 mRNA, complete cds	NA	coding protein	psRNATarget
BT085887.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||*|||||||||||||| targets:1402   CUUAGGUGCCGUUUGGUUCACAUA   1425 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0076I18 mRNA, complete cds	NA	coding protein	psRNATarget
AY150644.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||=||||||*|||||||||||||| targets:1530   CUUAGGUGCCGUUUGGUUCACAUA   1553 Target Full Sequence	1.0	Zea mays fertilization-independent endosperm protein 2 mRNA, complete cds	NA	coding protein	psRNATarget
BT061393.1	ncRNA:24   GA-GUCCACGACAAACCAAGUGUAU   1   ||-=|||||=||||||||||||||| targets:1004   CUAUAGGUGUUGUUUGGUUCACAUA   1028 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0142B17 mRNA, complete cds	NA	coding protein	psRNATarget
DQ246076.1	ncRNA:24   GA-GUCCACGACAAACCAAGUGUAU   1   ||-=|||||=||||||||||||||| targets:1068   CUAUAGGUGUUGUUUGGUUCACAUA   1092 Target Full Sequence	1.0	Zea mays clone 14394 mRNA sequence	NA	coding protein	psRNATarget
NM_001150191.1	ncRNA:24   GA-GUCCACGACAAACCAAGUGUAU   1   ||-=|||||=||||||||||||||| targets:1623   CUAUAGGUGUUGUUUGGUUCACAUA   1647 Target Full Sequence	1.0	Zea mays uncharacterized LOC100276386 (LOC100276386), mRNA	NA	coding protein	psRNATarget
EU961738.1	ncRNA:24   GA-GUCCACGACAAACCAAGUGUAU   1   ||-=|||||=||||||||||||||| targets:1623   CUAUAGGUGUUGUUUGGUUCACAUA   1647 Target Full Sequence	1.0	Zea mays clone 237981 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU941092.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   *|*||||||||||||||||||||| targets:608   AUAAGGUGCUGUUUGGUUCACAUA   631 Target Full Sequence	0.0	Zea mays clone 1287623 mRNA sequence	NA	coding protein	psRNATarget
EZ051494.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =|=||||||*|||||||||||||| targets:115   UUUAGGUGCCGUUUGGUUCACAUA   138 Target Full Sequence	1.0	TSA: Zea mays contig52614, mRNA sequence	NA	coding protein	psRNATarget
EU971290.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||==|||||*|||||||||||||| targets:623   CUUGGGUGCCGUUUGGUUCACAUA   646 Target Full Sequence	1.0	Zea mays clone 361496 mRNA sequence	NA	coding protein	psRNATarget
EU951063.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =||||||||*||||||||||=||| targets:735   UUCAGGUGCCGUUUGGUUCAUAUA   758 Target Full Sequence	2.5	Zea mays clone 687358 mRNA sequence	NA	coding protein	psRNATarget
XM_020543750.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =||||||||*||||||||||=||| targets:1242   UUCAGGUGCCGUUUGGUUCAUAUA   1265 Target Full Sequence	2.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU969502.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||==|||||*|||||||||||||| targets:1304   CUUGGGUGCCGUUUGGUUCACAUA   1327 Target Full Sequence	1.0	Zea mays clone 331112 mRNA sequence	NA	coding protein	psRNATarget
XM_008660564.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =||||||||*||||||||||=||| targets:1413   UUCAGGUGCCGUUUGGUUCAUAUA   1436 Target Full Sequence	2.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660561.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =||||||||*||||||||||=||| targets:1416   UUCAGGUGCCGUUUGGUUCAUAUA   1439 Target Full Sequence	2.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660562.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =||||||||*||||||||||=||| targets:1421   UUCAGGUGCCGUUUGGUUCAUAUA   1444 Target Full Sequence	2.5	PREDICTED: Zea mays Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (pco101658), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008666280.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   *||=*||||||||||||||||||| targets:1496   AUCGAGUGCUGUUUGGUUCACAUA   1519 Target Full Sequence	0.0	PREDICTED: Zea mays WAS/WASL-interacting protein family member 2 (LOC103643126), mRNA	NA	coding protein	psRNATarget
BT061786.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   |*==||||=||||||||||||||| targets:1151   CAUGGGUGUUGUUUGGUUCACAUA   1174 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0182O10 mRNA, complete cds	NA	coding protein	psRNATarget
BT062086.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   |*==||||=||||||||||||||| targets:1561   CAUGGGUGUUGUUUGGUUCACAUA   1584 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0213I11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001291850.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =|=|||||=|||||||||||||*| targets:2277   UUUAGGUGUUGUUUGGUUCACAAA   2300 Target Full Sequence	2.5	Zea mays cysteine-type peptidase (LOC103164604), mRNA	NA	coding protein	psRNATarget
BT054939.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   =|=|||||=|||||||||||||*| targets:2277   UUUAGGUGUUGUUUGGUUCACAAA   2300 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0076N03 mRNA, complete cds	NA	coding protein	psRNATarget
EU963612.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   **==||||=||||||||||||||| targets:1172   AAUGGGUGUUGUUUGGUUCACAUA   1195 Target Full Sequence	1.0	Zea mays clone 264680 FAD binding protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ238849.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*|||*||||||||||||=|||| targets:195   CUAAGGGGCUGUUUGGUUCGCAUA   218 Target Full Sequence	2.5	Sequence 4844 from Patent EP2985353	NA	coding protein	psRNATarget
HI406719.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*|||*||||||||||||=|||| targets:195   CUAAGGGGCUGUUUGGUUCGCAUA   218 Target Full Sequence	2.5	Sequence 4844 from Patent EP2074227	NA	coding protein	psRNATarget
JB167180.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*|||*||||||||||||=|||| targets:195   CUAAGGGGCUGUUUGGUUCGCAUA   218 Target Full Sequence	2.5	Sequence 4844 from Patent EP2559767	NA	coding protein	psRNATarget
BT037798.1	ncRNA:24   GAGUCCAC-GACAAACCAAGUGUAU   1   =|=|*|||-|||||||||||||||| targets:1180   UUUAUGUGACUGUUUGGUUCACAUA   1204 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0197A06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150015.2	ncRNA:24   GAGUCCAC-GACAAACCAAGUGUAU   1   =|=|*|||-|||||||||||||||| targets:1222   UUUAUGUGACUGUUUGGUUCACAUA   1246 Target Full Sequence	2.0	Zea mays uncharacterized LOC100276163 (LOC100276163), mRNA	NA	coding protein	psRNATarget
EU960396.1	ncRNA:24   GAGUCCAC-GACAAACCAAGUGUAU   1   =|=|*|||-|||||||||||||||| targets:1223   UUUAUGUGACUGUUUGGUUCACAUA   1247 Target Full Sequence	2.0	Zea mays clone 224483 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU967818.1	ncRNA:24   GAGU------C-CACGACAAACCAAGUGUAU   1   |||=------|-|||=||||||||||||||| targets:1372   CUCGUAAUAUGUGUGUUGUUUGGUUCACAUA   1402 Target Full Sequence	3.0	Zea mays clone 306358 mRNA sequence	NA	coding protein	psRNATarget
XM_008662421.2	ncRNA:24   GAGU------C-CACGACAAACCAAGUGUAU   1   |||=------|-|||=||||||||||||||| targets:1817   CUCGUAAUAUGUGUGUUGUUUGGUUCACAUA   1847 Target Full Sequence	3.0	PREDICTED: Zea mays hypothetical protein (LOC103639683), mRNA	NA	coding protein	psRNATarget
LQ238384.1	ncRNA:24   GAG--UCCACGACAAACCAAGUGUAU   1   |||--||||*||*||||||||||||| targets:7   CUCCUAGGUACUCUUUGGUUCACAUA   32 Target Full Sequence	2.0	Sequence 4379 from Patent EP2985353	NA	coding protein	psRNATarget
JB166715.1	ncRNA:24   GAG--UCCACGACAAACCAAGUGUAU   1   |||--||||*||*||||||||||||| targets:7   CUCCUAGGUACUCUUUGGUUCACAUA   32 Target Full Sequence	2.0	Sequence 4379 from Patent EP2559767	NA	coding protein	psRNATarget
HI406254.1	ncRNA:24   GAG--UCCACGACAAACCAAGUGUAU   1   |||--||||*||*||||||||||||| targets:7   CUCCUAGGUACUCUUUGGUUCACAUA   32 Target Full Sequence	2.0	Sequence 4379 from Patent EP2074227	NA	coding protein	psRNATarget
AY106246.1	ncRNA:24   GAGU-CCACGACAAACCAAGUGUAU   1   **||-|||||*|||||||||||||| targets:1403   ACCAUGGUGCCGUUUGGUUCACAUA   1427 Target Full Sequence	1.0	Zea mays PCO105094 mRNA sequence	NA	coding protein	psRNATarget
XM_008679572.2	ncRNA:24   GAGU-CCACGACAAACCAAGUGUAU   1   **||-|||||*|||||||||||||| targets:2260   ACCAUGGUGCCGUUUGGUUCACAUA   2284 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100283847 (pco105094(492)), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008683372.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*||*||*||||||||||||||| targets:533   CUAAGUUGAUGUUUGGUUCACAUA   556 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EU954034.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*||*||*||||||||||||||| targets:582   CUAAGUUGAUGUUUGGUUCACAUA   605 Target Full Sequence	2.0	Zea mays clone 1452385 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008683368.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*||*||*||||||||||||||| targets:573   CUAAGUUGAUGUUUGGUUCACAUA   596 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008683370.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*||*||*||||||||||||||| targets:588   CUAAGUUGAUGUUUGGUUCACAUA   611 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008683369.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*||*||*||||||||||||||| targets:591   CUAAGUUGAUGUUUGGUUCACAUA   614 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100275042), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001138025.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*|*|||*||||||||||||||| targets:1577   CUAAUGUGAUGUUUGGUUCACAUA   1600 Target Full Sequence	1.0	Zea mays uncharacterized LOC100192834 (LOC100192834), mRNA	NA	coding protein	psRNATarget
BT034927.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*|*|||*||||||||||||||| targets:1577   CUAAUGUGAUGUUUGGUUCACAUA   1600 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0028L20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149242.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*||*||*||||||||||||||| targets:2076   CUAAGUUGAUGUUUGGUUCACAUA   2099 Target Full Sequence	2.0	Zea mays hypothetical protein (LOC100275042), mRNA	NA	coding protein	psRNATarget
BT067480.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*||*||*||||||||||||||| targets:2076   CUAAGUUGAUGUUUGGUUCACAUA   2099 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0063K12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008673867.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||*|*|||*||||||||||||||| targets:2078   CUAAUGUGAUGUUUGGUUCACAUA   2101 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100192834 (LOC100192834), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT019257.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   ||**|||||*||||||||||=||| targets:993   CUAUGGUGCCGUUUGGUUCAUAUA   1016 Target Full Sequence	2.5	Zea mays clone Contig930.F mRNA sequence	NA	coding protein	psRNATarget
XM_008678575.2	ncRNA:20   CCACGACAAACCAAGUGUAU   1   ||||=*|||||||||||||| targets:1   GGUGUCGUUUGGUUCACAUA   20 Target Full Sequence	2.0	PREDICTED: Zea mays Protein LURP-one-related 8 (pco085810), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678573.2	ncRNA:20   CCACGACAAACCAAGUGUAU   1   ||||=*|||||||||||||| targets:1   GGUGUCGUUUGGUUCACAUA   20 Target Full Sequence	2.0	PREDICTED: Zea mays Protein LURP-one-related 8 (pco085810), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658451.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   *|==||||**|||||||||||||= targets:31   AUUGGGUGGCGUUUGGUUCACAUG   54 Target Full Sequence	3.0	PREDICTED: Zea mays S-type anion channel SLAH2 (LOC103636089), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU971174.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   |**||||||*||||||||||||*| targets:1821   CCAAGGUGCCGUUUGGUUCACAAA   1844 Target Full Sequence	2.5	Zea mays clone 358927 adenylosuccinate lyase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008659897.2	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   |**||||||*||||||||||||*| targets:1816   CCAAGGUGCCGUUUGGUUCACAAA   1839 Target Full Sequence	2.5	PREDICTED: Zea mays L-Aspartase-like family protein (IDP310), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT033581.1	ncRNA:24   GAGUCCACGACAAACCAAGUGUAU   1   |**||||||*||||||||||||*| targets:1733   CCAAGGUGCCGUUUGGUUCACAAA   1756 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0061F11 mRNA, complete cds	NA	coding protein	psRNATarget