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BaseInfo

ncRNA ID	novel_zma_miR8932
Species	Zea mays
Class	miRNA
Genome position	Chr4:54077310-54077433 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - AUUGGGGUAGAACCGAACAUGGCC - 24
Stem-loop(if miRNA)	---CU         -AU                   GA    -A     ACGGAUU     AGA      UGUUCGGUU   UUUUAAUCCAUAUGGAUUG  GGGG  UUAAU       GUGAG   U      |||||||||   |||||||||||||||||||  ||||  |||||       |||||   U      ACAAGCCAA   GGGGUUAGGUAUACCUAAC  CCCC  AGUUA       CAUUC   U CCGGU         GAU                   UC    AA     --GGGAU     AGU
Stem-loop sequence	CUUGUUCGGUUAUUUUUAAUCCAUAUGGAUUGGAGGGGAUUAAUACGGAUUGUGAGAGAUUUUGACUUACUAGGGAUUGAAACCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAUGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658561.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   ||=||||||||||||||||=|||| targets:210   GGUCAUGUUCGGUUCUACCUCAAU   233 Target Full Sequence	1.5	PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA	NA	coding protein	psRNATarget
EZ081763.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   ||=||||||||||||||||*|||| targets:44   GGUCAUGUUCGGUUCUACCACAAU   67 Target Full Sequence	1.5	TSA: Zea mays contig17404, mRNA sequence	NA	coding protein	psRNATarget
EZ061352.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:108   GGCU-UGUUCGGUUCUACCCCAAU   130 Target Full Sequence	0.0	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:355   GGCU-UGUUCGGUUCUACCCCAAU   377 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:694   GGCU-UGUUCGGUUCUACCCCAAU   716 Target Full Sequence	0.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:836   GGCU-UGUUCGGUUCUACCCCAAU   858 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:782   GGCU-UGUUCGGUUCUACCCCAAU   804 Target Full Sequence	0.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:782   GGCU-UGUUCGGUUCUACCCCAAU   804 Target Full Sequence	0.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:783   GGCU-UGUUCGGUUCUACCCCAAU   805 Target Full Sequence	0.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:919   GGCU-UGUUCGGUUCUACCCCAAU   941 Target Full Sequence	0.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:1039   GGCU-UGUUCGGUUCUACCCCAAU   1061 Target Full Sequence	0.0	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:855   GGCU-UGUUCGGUUCUACCCCAAU   877 Target Full Sequence	0.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:881   GGCU-UGUUCGGUUCUACCCCAAU   903 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:1900   GGCU-UGUUCGGUUCUACCCCAAU   1922 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:1900   GGCU-UGUUCGGUUCUACCCCAAU   1922 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:1673   GGCU-UGUUCGGUUCUACCCCAAU   1695 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||||||| targets:887   GGCU-UGUUCGGUUCUACCCCAAU   909 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||||||=||||| targets:748   GGCU-UGUUCGGUUCUACUCCAAU   770 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||*||||||||| targets:784   GGCU-UGUUCGGUUYUACCCCAAU   806 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||||||||||=| targets:799   GGCU-UGUUCGGUUCUACCCCAGU   821 Target Full Sequence	1.5	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||||||||||=| targets:799   GGCU-UGUUCGGUUCUACCCCAGU   821 Target Full Sequence	1.5	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||||||||||=|||| targets:1540   GGCU-UGUUCGGUUCUACCUCAAU   1562 Target Full Sequence	1.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EZ068230.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   **|=|||||||||||||*|||||| targets:29   CACUAUGUUCGGUUCUAGCCCAAU   52 Target Full Sequence	1.5	TSA: Zea mays contig03865, mRNA sequence	NA	coding protein	psRNATarget
XM_020549355.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||*|||||||||||| targets:849   GGCU-UGUUCGAUUCUACCCCAAU   871 Target Full Sequence	1.5	PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||*||||||||| targets:1341   GGCU-UGUUCGGUUAUACCCCAAU   1363 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||*||||||||| targets:1385   GGCU-UGUUCGGUUAUACCCCAAU   1407 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||*||||||||| targets:1403   GGCU-UGUUCGGUUAUACCCCAAU   1425 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||*||||||||| targets:1417   GGCU-UGUUCGGUUAUACCCCAAU   1439 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||*||||||||| targets:1417   GGCU-UGUUCGGUUAUACCCCAAU   1439 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-|||||||||*||||||||| targets:1608   GGCU-UGUUCGGUUAUACCCCAAU   1630 Target Full Sequence	1.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   |||=-||||||*|||||||||||| targets:3030   GGCU-UGUUCGUUUCUACCCCAAU   3052 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   *||=-||||||*|||||||||||| targets:8   AGCU-UGUUCGUUUCUACCCCAAU   30 Target Full Sequence	1.5	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
JB167104.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   *||=-||||||*|||||||||||| targets:8   AGCU-UGUUCGUUUCUACCCCAAU   30 Target Full Sequence	1.5	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
HI406643.1	ncRNA:24   CCGGUACAAGCCAAGAUGGGGUUA   1   *||=-||||||*|||||||||||| targets:8   AGCU-UGUUCGUUUCUACCCCAAU   30 Target Full Sequence	1.5	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget