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BaseInfo

ncRNA ID novel_zma_miR8931
Species Zea mays
Class miRNA
Genome position Chr4:56917903-56917959 [-]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 1 - GGACAGUGUCCGGUGCCCUGGCUG - 24
Stem-loop(if miRNA) --     U   GC       --        G
  GCCAG GGC  ACCGGAC  UGUCCGGU U
  ||||| |||  |||||||  ||||||||
  CGGUC CCG  UGGCCUG  ACAGGCCA G
GU     -   --       UG        C
Stem-loop sequence GCCAGUGGCGCACCGGACUGUCCGGUGUGCACCGGACAGUGUCCGGUGCCCUGGCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ087827.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |||||*||||||||||||||||||
targets:25   CAGCCUGGGCACCGGACACUGUCC   48

1.0 TSA: Zea mays contig23473, mRNA sequence NA coding protein psRNATarget
LQ242313.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:6   CAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 8308 from Patent EP2985353 NA coding protein psRNATarget
JB170644.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:6   CAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 8308 from Patent EP2559767 NA coding protein psRNATarget
LQ241168.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:6   CAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 7163 from Patent EP2985353 NA coding protein psRNATarget
JB169499.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:6   CAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 7163 from Patent EP2559767 NA coding protein psRNATarget
HI409038.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:6   CAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 7163 from Patent EP2074227 NA coding protein psRNATarget
HI410183.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:6   CAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 8308 from Patent EP2074227 NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:792   CAGCCUGGCGCACCGGACACUGUCC   816

3.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:792   CAGCCUGGCGCACCGGACACUGUCC   816

3.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:776   CAGCCUGGCGCACCGGACACUGUCC   800

3.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:776   CAGCCUGGCGCACCGGACACUGUCC   800

3.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
EU940974.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:2847   CAGCCUGGCGCACCGGACACUGUCC   2871

3.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||||*||-||||||||||||||||
targets:4687   CAGCCUGGCGCACCGGACACUGUCC   4711

3.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
JB169901.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  =||||*||-||||||||||||||||
targets:6   UAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 7565 from Patent EP2559767 NA coding protein psRNATarget
LQ241570.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  =||||*||-||||||||||||||||
targets:6   UAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 7565 from Patent EP2985353 NA coding protein psRNATarget
HI409440.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  =||||*||-||||||||||||||||
targets:6   UAGCCUGGCGCACCGGACACUGUCC   30

3.0 Sequence 7565 from Patent EP2074227 NA coding protein psRNATarget
EZ101438.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |=|||*||-||||||||||||||||
targets:11   CGGCCUGGCGCACCGGACACUGUCC   35

3.0 TSA: Zea mays contig37094, mRNA sequence NA coding protein psRNATarget
BT061124.2
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||=|*||-||||||||||||||||
targets:639   CAGUCUGGCGCACCGGACACUGUCC   663

3.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  |||=|*||-||||||||||||||||
targets:639   CAGUCUGGCGCACCGGACACUGUCC   663

3.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
EU940831.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  =||||*||-||||||||||||||||
targets:487   UAGCCUGGCGCACCGGACACUGUCC   511

3.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
XM_020538749.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |=|||*||||||||||||*|||||
targets:15   CGGCCUGGGCACCGGACAGUGUCC   38

2.5 PREDICTED: Zea mays hypothetical protein (LOC103627902), mRNA NA coding protein psRNATarget
EZ106959.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  ||*||*||-||||||||||||||||
targets:70   CACCCUGGUGCACCGGACACUGUCC   94

3.0 TSA: Zea mays contig42617, mRNA sequence NA coding protein psRNATarget
JB170118.1
ncRNA:24   GUC-GGUCC-CGUGGCCUGUGACAGG   1
  |=|-||*||-||||||||||||||||
targets:9   CGGUCCUGGUGCACCGGACACUGUCC   34

3.0 Sequence 7782 from Patent EP2559767 NA coding protein psRNATarget
HI409657.1
ncRNA:24   GUC-GGUCC-CGUGGCCUGUGACAGG   1
  |=|-||*||-||||||||||||||||
targets:9   CGGUCCUGGUGCACCGGACACUGUCC   34

3.0 Sequence 7782 from Patent EP2074227 NA coding protein psRNATarget
LQ241787.1
ncRNA:24   GUC-GGUCC-CGUGGCCUGUGACAGG   1
  |=|-||*||-||||||||||||||||
targets:9   CGGUCCUGGUGCACCGGACACUGUCC   34

3.0 Sequence 7782 from Patent EP2985353 NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  ==|=|*||-||||||||||||||||
targets:815   UGGUCUGGCGCACCGGACACUGUCC   839

3.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  ==|=|*||-||||||||||||||||
targets:815   UGGUCUGGCGCACCGGACACUGUCC   839

3.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
LQ241219.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |*|===|*||||||||||||||||
targets:171   CCGUUGGCGCACCGGACACUGUCC   194

2.0 Sequence 7214 from Patent EP2985353 NA coding protein psRNATarget
HI409089.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |*|===|*||||||||||||||||
targets:171   CCGUUGGCGCACCGGACACUGUCC   194

2.0 Sequence 7214 from Patent EP2074227 NA coding protein psRNATarget
JB169550.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |*|===|*||||||||||||||||
targets:171   CCGUUGGCGCACCGGACACUGUCC   194

2.0 Sequence 7214 from Patent EP2559767 NA coding protein psRNATarget
JB170370.1
ncRNA:24   GUCG-GUCCCGUGGCCUGUGACAGG   1
  |||=-==|*|||||||||||||||=
targets:8   CAGUAUGGCGCACCGGACACUGUCU   32

3.0 Sequence 8034 from Patent EP2559767 NA coding protein psRNATarget
HI409909.1
ncRNA:24   GUCG-GUCCCGUGGCCUGUGACAGG   1
  |||=-==|*|||||||||||||||=
targets:8   CAGUAUGGCGCACCGGACACUGUCU   32

3.0 Sequence 8034 from Patent EP2074227 NA coding protein psRNATarget
LQ242039.1
ncRNA:24   GUCG-GUCCCGUGGCCUGUGACAGG   1
  |||=-==|*|||||||||||||||=
targets:8   CAGUAUGGCGCACCGGACACUGUCU   32

3.0 Sequence 8034 from Patent EP2985353 NA coding protein psRNATarget
BT066461.2
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |||===|**|||||||||||||||
targets:588   CAGUUGGCACACCGGACACUGUCC   611

3.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |*|===|*||||||||||||||||
targets:510   CCGUUGGCGCACCGGACACUGUCC   533

2.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  ||*=|*||-||||||||||||||||
targets:900   CACUCUGGUGCACCGGACACUGUCC   924

3.0 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
BT061709.2
ncRNA:24   GUCGGUCC-CGUGGCCUGUGACAGG   1
  ||*=|*||-||||||||||||||||
targets:900   CACUCUGGUGCACCGGACACUGUCC   924

3.0 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
BT069074.2
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |*||==|**|||||||||||||||
targets:657   CCGCUGGCACACCGGACACUGUCC   680

3.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
EU952213.1
ncRNA:24   GU-CGGUCCCGUGGCCUGUGACAGG   1
  ||-|*==|*||||||||||||||||
targets:282   CAUGGUGGCGCACCGGACACUGUCC   306

2.0 Zea mays clone 1226497 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
LQ241767.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  =**===|*||||||||||||||||
targets:77   UCCUUGGAGCACCGGACACUGUCC   100

2.0 Sequence 7762 from Patent EP2985353 NA coding protein psRNATarget
HI409637.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  =**===|*||||||||||||||||
targets:77   UCCUUGGAGCACCGGACACUGUCC   100

2.0 Sequence 7762 from Patent EP2074227 NA coding protein psRNATarget
JB170098.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  =**===|*||||||||||||||||
targets:77   UCCUUGGAGCACCGGACACUGUCC   100

2.0 Sequence 7762 from Patent EP2559767 NA coding protein psRNATarget
EZ107368.1
ncRNA:24   GUCGGUCCCGUGGCCUGUGACAGG   1
  |**===|*||||||||||||||||
targets:60   CCCUUGGCGCACCGGACACUGUCC   83

2.0 TSA: Zea mays contig43026, mRNA sequence NA coding protein psRNATarget
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