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BaseInfo

ncRNA ID novel_zma_miR8930
Species Zea mays
Class miRNA
Genome position Chr4:95324315-95324397 [-]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 1 - AAUUAAUUCCCGUCGGCCCGCACG - 24
Stem-loop(if miRNA) -U  A U                A     UU        UU
  UG C GGCCGACGGGAAUUAA UAAUU  CGUCGGCC  A
  || | |||||||||||||||| |||||  ||||||||  C
  AC G CCGGCUGCCCUUAAUU AUUAG  GCAGCCGG  U
GC  - C                A     GG        UU
Stem-loop sequence UUGACUGGCCGACGGGAAUUAAAUAAUUUUCGUCGGCCUUACUUUGGCCGACGGGGAUUAAUUAAUUCCCGUCGGCCCGCACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020550853.1
ncRNA:24   GCAC---GCCCGGCUGCCCUUAAUUAA   1
  |*||---=|*|||||||||||||||||
targets:67   CUUGACCUGAGCCGACGGGAAUUAAUU   93

1.0 PREDICTED: Zea mays lysine-rich arabinogalactan protein 19-like (LOC103652054), mRNA NA coding protein psRNATarget
XM_020552125.1
ncRNA:24   GCACGCCCGGCUGCCCUUAAUUAA   1
  =***=***||||||||||||||||
targets:19   UACAUAUCCCGACGGGAAUUAAUU   42

3.0 PREDICTED: Zea mays lysine-rich arabinogalactan protein 19-like (LOC109945774), mRNA NA coding protein psRNATarget
XM_020542511.1
ncRNA:24   GCACGCCCGGCUGCCCUUAAUUAA   1
  ****=|**||||||||||||||||
targets:259   AUCCUGACCCGACGGGAAUUAAUU   282

3.0 PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109941489), mRNA NA coding protein psRNATarget