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BaseInfo

ncRNA ID	novel_zma_miR8913
Species	Zea mays
Class	miRNA
Genome position	Chr4:246337761-246337836 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	53 - AUUCUAGCCCCCUCAAUCCACUCC - 76
Stem-loop(if miRNA)	--AGG               U      UC      CAA      GGAUUGAGGGGGCUA AAUCCC  ACUAUU   A      ||||||||||||||| ||||||  ||||||      CCUAACUCCCCCGAU UUAGGG  UGAUGA   A CCUCA               C      GA      AUU
Stem-loop sequence	AGGGGAUUGAGGGGGCUAUAAUCCCUCACUAUUCAAAAUUAAGUAGUAGGGGAUUCUAGCCCCCUCAAUCCACUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ054947.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   ||||*||||||||||*|||||||| targets:14   GGAGGGGAUUGAGGGAGCUAGAAU   37 Target Full Sequence	1.5	TSA: Zea mays contig56069, mRNA sequence	NA	coding protein	psRNATarget
XM_020549567.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   ||||*|||||||||*||||||||| targets:1008   GGAGGGGAUUGAGGAGGCUAGAAU   1031 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100273482), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001196723.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||||||||||| targets:1160   GAAGGGGAUUGAGGGGGCUAGAAU   1183 Target Full Sequence	0.0	Zea mays uncharacterized LOC100502246 (LOC100502246), mRNA	NA	coding protein	psRNATarget
BT087519.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||||||||||| targets:1160   GAAGGGGAUUGAGGGGGCUAGAAU   1183 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0100J09 mRNA, complete cds	NA	coding protein	psRNATarget
AY109112.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   **||||||||||*||||||||||| targets:896   UAAGUGGAUUGAAGGGGCUAGAAU   919 Target Full Sequence	1.5	Zea mays PCO134243 mRNA sequence	NA	coding protein	psRNATarget
XM_020540546.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||=|||||||||||||||| targets:1511   GAAGGGGGUUGAGGGGGCUAGAAU   1534 Target Full Sequence	1.0	PREDICTED: Zea mays 50S ribosomal protein L12-2 (LOC100283458), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546438.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   ||=|*|||||||*||||||||||| targets:3156   GGGGAGGAUUGAAGGGGCUAGAAU   3179 Target Full Sequence	1.5	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103637688), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT019066.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   *|||*||||||||||*|||||||| targets:72   AGAGAGGAUUGAGGGAGCUAGAAU   95 Target Full Sequence	1.5	Zea mays clone Contig620.F mRNA sequence	NA	coding protein	psRNATarget
HI406069.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||*|||||||| targets:28   GAAGGGGAUUGAGGGUGCUAGAAU   51 Target Full Sequence	1.5	Sequence 4194 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238199.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||*|||||||| targets:28   GAAGGGGAUUGAGGGUGCUAGAAU   51 Target Full Sequence	1.5	Sequence 4194 from Patent EP2985353	NA	coding protein	psRNATarget
JB166530.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||*|||||||| targets:28   GAAGGGGAUUGAGGGUGCUAGAAU   51 Target Full Sequence	1.5	Sequence 4194 from Patent EP2559767	NA	coding protein	psRNATarget
EZ050474.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*|||||||||||||||*||| targets:105   GAAGGGGAUUGAGGGGGCUAUAAU   128 Target Full Sequence	1.5	TSA: Zea mays contig51594, mRNA sequence	NA	coding protein	psRNATarget
BT036654.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||*|||||||| targets:981   GAAGGGGAUUGAGGGUGCUAGAAU   1004 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0128D05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001349849.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||*|||||||| targets:814   GAAGGGGAUUGAGGGUGCUAGAAU   837 Target Full Sequence	1.5	Zea mays uncharacterized LOC100194187 (LOC100194187), mRNA	NA	coding protein	psRNATarget
EU952717.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   |*||*||||||||||*|||||||| targets:814   GAAGGGGAUUGAGGGUGCUAGAAU   837 Target Full Sequence	1.5	Zea mays clone 1287070 zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget
AY109657.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   *|||*||||||||||*|||||||* targets:59   AGAGAGGAUUGAGGGAGCUAGAAC   82 Target Full Sequence	2.5	Zea mays CL30827_1 mRNA sequence	NA	coding protein	psRNATarget
BT018904.1	ncRNA:24   CCUCACCUAACUCCCCCGAUCUUA   1   **||*|||||||*||||||||||| targets:1730   UAAGGGGAUUGAAGGGGCUAGAAU   1753 Target Full Sequence	1.5	Zea mays clone EL01T0208E01.d mRNA sequence	NA	coding protein	psRNATarget