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BaseInfo

ncRNA ID	novel_zma_miR8904
Species	Zea mays
Class	miRNA
Genome position	Chr4:158283029-158283178 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - ACUUAAGGGCUUGUUCGGUUAGCU - 24
Stem-loop(if miRNA)	--     A               GC      UC           AG       -----------   -U        AUCCC   ACUUA GGGCUUGUUCGGUUA  UCUCAA  CAUGUGGAUUG  UGGGAUU           AGA  GAGUUUGA     A   ||||| |||||||||||||||  ||||||  |||||||||||  |||||||           |||  ||||||||   UGAAU CCCGAACAAGCCAAU  AGGGUU  GUGUACCUAAC  ACCCUAA           UCU  UUCAAACU     A GA     -               -A      UU           CU       CCUUUUUUAAC   UC        GAACA
Stem-loop sequence	ACUUAAGGGCUUGUUCGGUUAGCUCUCAAUCCAUGUGGAUUGAGUGGGAUUAGAUGAGUUUGAAUCCCAAACAAGUCAAACUUCUUCUCAAUUUUUUCCAAUCCCAUCCAAUCCAUGUGUUUUGGGAAUAACCGAACAAGCCCUAAGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163551.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |||||||||||||||||||||=|* targets:130   AGCUAACCGAACAAGCCCUUAGGG   153 Target Full Sequence	2.5	Sequence 1215 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235220.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |||||||||||||||||||||=|* targets:130   AGCUAACCGAACAAGCCCUUAGGG   153 Target Full Sequence	2.5	Sequence 1215 from Patent EP2985353	NA	coding protein	psRNATarget
HI403090.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |||||||||||||||||||||=|* targets:130   AGCUAACCGAACAAGCCCUUAGGG   153 Target Full Sequence	2.5	Sequence 1215 from Patent EP2074227	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |||||||||||||||||||*|||| targets:48   AGCUAACCGAACAAGCCCUCAAGU   71 Target Full Sequence	1.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
XM_020549843.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   ||||||||||||||||||||||** targets:1113   AGCUAACCGAACAAGCCCUUAAAA   1136 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020549841.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   ||||||||||||||||||||||** targets:1231   AGCUAACCGAACAAGCCCUUAAAA   1254 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542014.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   ||||||||||||||||||||||** targets:216   AGCUAACCGAACAAGCCCUUAAUC   239 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100277104 (LOC100277104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549842.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   ||||||||||||||||||||||** targets:1231   AGCUAACCGAACAAGCCCUUAAAA   1254 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100381972 (LOC100381972), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |**||||||||||||||||||||| targets:812   AAAUAACCGAACAAGCCCUUAAGU   835 Target Full Sequence	0.0	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054119.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   **|||||||||||||||||||||* targets:468   UUCUAACCGAACAAGCCCUUAAGA   491 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052459.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   ||=||||||||||||||||||*|* targets:51   AGUUAACCGAACAAGCCCUUACGG   74 Target Full Sequence	2.5	TSA: Zea mays contig53580, mRNA sequence	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |**||||||||||||||||||=|| targets:1998   AUAUAACCGAACAAGCCCUUAGGU   2021 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |*||||||||||||||||||||** targets:148   ACCUAACCGAACAAGCCCUUAAUA   171 Target Full Sequence	2.5	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |*||||||||||||||||||||** targets:218   ACCUAACCGAACAAGCCCUUAAUA   241 Target Full Sequence	2.5	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |*||||||||||||||||||||** targets:208   ACCUAACCGAACAAGCCCUUAAUA   231 Target Full Sequence	2.5	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =*||||||||||||||||||||** targets:433   GCCUAACCGAACAAGCCCUUAAUA   456 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =*||||||||||||||||||||** targets:793   GCCUAACCGAACAAGCCCUUAAUA   816 Target Full Sequence	2.5	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
XM_008658770.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**||||||||||||||||||||* targets:2880   GAAUAACCGAACAAGCCCUUAAGG   2903 Target Full Sequence	1.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658769.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**||||||||||||||||||||* targets:2889   GAAUAACCGAACAAGCCCUUAAGG   2912 Target Full Sequence	1.0	PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018247.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUU-CA   1   =**|||||||||||||||||||-|| targets:489   GAAUAACCGAACAAGCCCUUAAAGU   513 Target Full Sequence	3.0	Zea mays clone EL01N0563E06.c mRNA sequence	NA	coding protein	psRNATarget
BT086611.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =*=||||||||||||*|||||||| targets:1172   GAUUAACCGAACAAGGCCUUAAGU   1195 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0191G08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196567.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =*=||||||||||||*|||||||| targets:1236   GAUUAACCGAACAAGGCCUUAAGU   1259 Target Full Sequence	1.5	Zea mays resistance to phytophthora 1 (LOC100501929), mRNA	NA	coding protein	psRNATarget
EU945457.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   *||-|||||||||||||||||||* targets:285   UGC-AACCGAACAAGCCCUUAAGG   307 Target Full Sequence	1.0	Zea mays clone 273811 mRNA sequence	NA	coding protein	psRNATarget
XM_020539151.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =*=||||||||||||*|||||||| targets:319   GAUUAACCGAACAAGGCCUUAAGU   342 Target Full Sequence	1.5	PREDICTED: Zea mays resistance to phytophthora 1 (LOC100501929), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964623.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**||||||||||||||||||=|* targets:1544   GAAUAACCGAACAAGCCCUUAGGC   1567 Target Full Sequence	2.5	Zea mays clone 280415 sorting nexin 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**||||||||||||||||||=|* targets:308   GAAUAACCGAACAAGCCCUUAGGG   331 Target Full Sequence	2.5	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   **|||||||||||||||||||*|* targets:1048   UACUAACCGAACAAGCCCUUAUGG   1071 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020551219.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =|=*||*||||||||||||||||| targets:321   GGUGAAACGAACAAGCCCUUAAGU   344 Target Full Sequence	1.0	PREDICTED: Zea mays WW domain-binding protein 11 (LOC100280956), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |**|||||||||||||||||||*| targets:1004   AAAUAACCGAACAAGCCCUUAACU   1027 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT066364.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**|||||||||||||||||||** targets:1550   GAAUAACCGAACAAGCCCUUAAAA   1573 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175812.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**|||||||||||||||||||** targets:1550   GAAUAACCGAACAAGCCCUUAAAA   1573 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA	NA	coding protein	psRNATarget
XM_008674543.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**|||||||||||||||||||** targets:2528   GAAUAACCGAACAAGCCCUUAAAA   2551 Target Full Sequence	2.5	PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |**|||||||||||||||||||** targets:3148   AAAUAACCGAACAAGCCCUUAAAG   3171 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
BT069908.1	ncRNA:24   UCGA--UUGGCUUGUUCGGGAAUUCA   1   ||*|--|||||||||||||||*|||| targets:289   AGAUGAAACCGAACAAGCCCUCAAGU   314 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0320O20 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176906.1	ncRNA:24   UCGA--UUGGCUUGUUCGGGAAUUCA   1   ||*|--|||||||||||||||*|||| targets:289   AGAUGAAACCGAACAAGCCCUCAAGU   314 Target Full Sequence	1.5	Zea mays uncharacterized LOC100384359 (LOC100384359), mRNA	NA	coding protein	psRNATarget
EZ092886.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |**||||||||||||||||*|||* targets:96   AAAUAACCGAACAAGCCCUAAAGG   119 Target Full Sequence	2.5	TSA: Zea mays contig28535, mRNA sequence	NA	coding protein	psRNATarget
AY109413.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**||||||||||||*|||||||* targets:1677   GAAUAACCGAACAAGGCCUUAAGG   1700 Target Full Sequence	2.5	Zea mays CL2362_1 mRNA sequence	NA	coding protein	psRNATarget
EU970939.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   =**||||||||||||||||*|||* targets:2134   GAAUAACCGAACAAGCCCUAAAGC   2157 Target Full Sequence	2.5	Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds	NA	coding protein	psRNATarget
BT085555.1	ncRNA:24   UCGAUUGGCUUGUUCGGGAAUUCA   1   |***||||||||||||||||||** targets:1388   AUGAAACCGAACAAGCCCUUAAAA   1411 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0032K01 mRNA, complete cds	NA	coding protein	psRNATarget