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BaseInfo

ncRNA ID	novel_zma_miR8902
Species	Zea mays
Class	miRNA
Genome position	Chr3:190221424-190221510 [+]
Reference genome	RefGen_v4
Source	SRR1997865;SRR1997866
Length	24
Mature sequence(if miRNA)	1 - AAAGAUCCAAACAGAAAGAGCUAA - 24
Stem-loop(if miRNA)	--           CA   A        AC        U  A  U   AAAGAUCCAAA  GAA GAGCUAAA  UGACUAAA UG UA U   |||||||||||  ||| ||||||||  |||||||| || ||   UUUCUAGGUUU  CUU CUCGAUUU  ACUGAUUU GC AU U UA           UA   -        GC        U  C  U
Stem-loop sequence	AAAGAUCCAAACAGAAAGAGCUAAAACUGACUAAAUUGAUAUUUUUACCGUUUUAGUCACGUUUAGCUCUUCAUUUUGGAUCUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538817.1	ncRNA:24   AAUCGAGAAAGACAAACCUAGAAA   1   |||||||||*||||||||||*||| targets:1362   UUAGCUCUUCCUGUUUGGAUAUUU   1385 Target Full Sequence	2.5	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020538816.1	ncRNA:24   AAUCGAGAAAGACAAACCUAGAAA   1   |||||||||*||||||||||*||| targets:1385   UUAGCUCUUCCUGUUUGGAUAUUU   1408 Target Full Sequence	2.5	PREDICTED: Zea mays DNA damage-binding protein 1a (PCO068526), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:24   AAUCGAGAAAGACAAACCUAGAAA   1   |||*|||||||||||*|||||||| targets:2449   UUAACUCUUUCUGUUGGGAUCUUU   2472 Target Full Sequence	1.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
EU948982.1	ncRNA:24   AAUC---GAGAAAGACAAACCUAGAAA   1   ||||---||=*|||||||||||||||| targets:744   UUAGUCACUUCUUCUGUUUGGAUCUUU   770 Target Full Sequence	2.0	Zea mays clone 392657 mRNA sequence	NA	coding protein	psRNATarget
DQ245426.1	ncRNA:24   AAUCGAGAAAGACAAACCUAGAAA   1   **|||||*||=||||||||||||* targets:50   CGAGCUCGUUUUGUUUGGAUCUUC   73 Target Full Sequence	3.0	Zea mays clone 15411 mRNA sequence	NA	coding protein	psRNATarget
EU952689.1	ncRNA:24   AAUCGAGAAAGACAAACCUAGAAA   1   **|||||*||=||||||||||||* targets:70   CGAGCUCGUUUUGUUUGGAUCUUC   93 Target Full Sequence	3.0	Zea mays clone 1286356 succinate dehydrogenase subunit 3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156252.2	ncRNA:24   AAUCGAGAAAGACAAACCUAGAAA   1   **|||||*||=||||||||||||* targets:94   CGAGCUCGUUUUGUUUGGAUCUUC   117 Target Full Sequence	3.0	Zea mays succinate dehydrogenase subunit 3 (LOC100283351), mRNA	NA	coding protein	psRNATarget
EU964418.1	ncRNA:24   AAUCGAGAAAGACAAACCUAGAAA   1   **|||||*||=||||||||||||* targets:95   CGAGCUCGUUUUGUUUGGAUCUUC   118 Target Full Sequence	3.0	Zea mays clone 278738 succinate dehydrogenase subunit 3 mRNA, complete cds	NA	coding protein	psRNATarget