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BaseInfo

ncRNA ID	novel_zma_miR8883
Species	Zea mays
Class	miRNA
Genome position	Chr3:28847250-28847410 [+]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237223;SRR4237224;SRR4237226
Length	24
Mature sequence(if miRNA)	138 - AUUAGUCCCUCUAAACCAAACACC - 161
Stem-loop(if miRNA)	--          -U         AC           ---------CA        U C                              UGUUUGGUUU  AGGGACUAA  UUUAGUCCCUU           AUUUUAGU C UAAAUUAUUAAAUAUGGAAACUAAAAUA   ||||||||||  |||||||||  |||||||||||           |||||||| | |||||||||||||||||||||||||||A   ACAAACCAAA  UCCCUGAUU  AAAUCAGGGAG           UAAAAUCA G AUUUAAUAGUUUAUAUCUUUGAUUUUGA CC          UC         AA           AUAAAAUAUGG        U A
Stem-loop sequence	UGUUUGGUUUUAGGGACUAAACUUUAGUCCCUUCAAUUUUAGUUCCUAAAUUAUUAAAUAUGGAAACUAAAAUAAAGUUUUAGUUUCUAUAUUUGAUAAUUUAAGUACUAAAAUGGUAUAAAAUAGAGGGACUAAAAAUUAGUCCCUCUAAACCAAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ061563.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:319   GGUGUUUGGUUUAUAGGGACUAAU   342 Target Full Sequence	1.5	TSA: Zea mays contig62685, mRNA sequence	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186 Target Full Sequence	1.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1163   GGUGUUUGGUUUAUAGGGACUAAU   1186 Target Full Sequence	1.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:1242   GGUGUUUGGUUUAUAGGGACUAAU   1265 Target Full Sequence	1.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
BT083492.2	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||| targets:648   GGUGUUUGGUUUAUAGGGACUAAU   671 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
JB163455.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||* targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24 Target Full Sequence	2.5	Sequence 1119 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235124.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||* targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24 Target Full Sequence	2.5	Sequence 1119 from Patent EP2985353	NA	coding protein	psRNATarget
HI402994.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||* targets:1   GGUGUUUGGUUUAUAGGGACUAAA   24 Target Full Sequence	2.5	Sequence 1119 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   *||||||||||||*|||||||||| targets:810   AGUGUUUGGUUUAUAGGGACUAAU   833 Target Full Sequence	1.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001112602.2	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||* targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121 Target Full Sequence	2.5	Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA	NA	coding protein	psRNATarget
EU967664.1	ncRNA:24   CCACAAACCAAAUCUCCCUGAUUA   1   |||||||||||||*|||||||||* targets:1098   GGUGUUUGGUUUAUAGGGACUAAA   1121 Target Full Sequence	2.5	Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675552.2	ncRNA:24   CC-ACAAACCAAAUCUCCCUGAUUA   1   ||-|||||||||||*|||||||||| targets:1293   GGAUGUUUGGUUUAUAGGGACUAAU   1317 Target Full Sequence	1.5	PREDICTED: Zea mays LOB domain-containing protein 40 (LOC103649851), mRNA	NA	coding protein	psRNATarget