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BaseInfo

ncRNA ID	novel_zma_miR8882
Species	Zea mays
Class	miRNA
Genome position	Chr3:182503862-182503980 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	96 - AGUGGAAUAAAUUAGAGGGACUAA - 119
Stem-loop(if miRNA)	--        CAU                 UA       CA              UAAC   AGUCCCUC   UUUAUUCCACUUUAGUC  UAAAUUG  AAAUAUGGAAACUA    U   ||||||||   |||||||||||||||||  |||||||  ||||||||||||||    C   UCAGGGAG   AAAUAAGGUGAAAUCAG  AUUUAAC  UUUAUACUUUUGAU    U AA        AUU                 UG       AG              UUUA
Stem-loop sequence	AGUCCCUCCAUUUUAUUCCACUUUAGUCUAUAAAUUGCAAAAUAUGGAAACUAUAACUCUAUUUUAGUUUUCAUAUUUGACAAUUUAGUGACUAAAGUGGAAUAAAUUAGAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020552869.1	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   ||||||||||*||||||||||||| targets:1657   UUAGUCCCUCCAAUUUAUUCCACU   1680 Target Full Sequence	1.0	PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020550132.1	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   ||||||||||*||||||||||||| targets:18   UUAGUCCCUCCAAUUUAUUCCACU   41 Target Full Sequence	1.0	PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   ||||||||||*|||||||||||=| targets:141   UUAGUCCCUCCAAUUUAUUCCAUU   164 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   ||||||||||*|*||||||||||| targets:2987   UUAGUCCCUCCAUUUUAUUCCACU   3010 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   ||||||||||*|*||||||||||| targets:2598   UUAGUCCCUCCAUUUUAUUCCACU   2621 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008651702.2	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   ||||||||||*|*||||||||||| targets:480   UUAGUCCCUCCAUUUUAUUCCACU   503 Target Full Sequence	2.5	PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA	NA	coding protein	psRNATarget
LQ238923.1	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   |||*||||||**|||||||||||| targets:7   UUAAUCCCUCCCAUUUAUUCCACU   30 Target Full Sequence	2.5	Sequence 4918 from Patent EP2985353	NA	coding protein	psRNATarget
JB167254.1	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   |||*||||||**|||||||||||| targets:7   UUAAUCCCUCCCAUUUAUUCCACU   30 Target Full Sequence	2.5	Sequence 4918 from Patent EP2559767	NA	coding protein	psRNATarget
HI406793.1	ncRNA:24   AAUCAGGGAGAUUAAAUAAGGUGA   1   |||*||||||**|||||||||||| targets:7   UUAAUCCCUCCCAUUUAUUCCACU   30 Target Full Sequence	2.5	Sequence 4918 from Patent EP2074227	NA	coding protein	psRNATarget