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BaseInfo

ncRNA ID	novel_zma_miR8880
Species	Zea mays
Class	miRNA
Genome position	Chr3:194422534-194422660 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - UUUGGGAUUAAACGAACAUGGCCU - 24
Stem-loop(if miRNA)	--             U  G    -U                     AAAUCCCCUAC   UCAA   GCCAUGUUCGUUU GU CCAA  CCAUAGGGAUUGAGGGGGAUU           AAG    A   ||||||||||||| || ||||  |||||||||||||||||||||           |||   CGGUACAAGCAAA UA GGUU  GGUAUCCCUAACUCCCCCUAA           UUC    A UC             U  G    UU                     CCUUCCCUAAC   UCCU
Stem-loop sequence	GCCAUGUUCGUUUUGUGCCAAUCCAUAGGGAUUGAGGGGGAUUAAAUCCCCUACAAGUCAAAAUCCUCUUCAAUCCCUUCCAAUCCCCCUCAAUCCCUAUGGUUUUGGGAUUAAACGAACAUGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU975951.1	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   |||||||||||||||=|||||||| targets:26   AGGCCAUGUUCGUUUGAUCCCAAA   49 Target Full Sequence	1.5	Zea mays clone 506398 mRNA sequence	NA	coding protein	psRNATarget
XM_008653299.2	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   |||||||||||||||=|||||||| targets:738   AGGCCAUGUUCGUUUGAUCCCAAA   761 Target Full Sequence	1.5	PREDICTED: Zea mays protein UXT (LOC100284726), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008664721.2	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   |||||||||||||||=|||||||| targets:3146   AGGCCAUGUUCGUUUGAUCCCAAA   3169 Target Full Sequence	1.5	PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103641369), mRNA	NA	coding protein	psRNATarget
XM_020537815.1	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   |||||||||||||||=|||||||| targets:2521   AGGCCAUGUUCGUUUGAUCCCAAA   2544 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA	NA	coding protein	psRNATarget
EU959460.1	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   |||=|||||||||||=|||||||| targets:1160   AGGUCAUGUUCGUUUGAUCCCAAA   1183 Target Full Sequence	1.5	Zea mays clone 218223 CTD small phosphatase-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154990.1	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   |||=|||||||||||=|||||||| targets:1160   AGGUCAUGUUCGUUUGAUCCCAAA   1183 Target Full Sequence	1.5	Zea mays CTD small phosphatase-like protein (cl28155_-2), mRNA	NA	coding protein	psRNATarget
NM_001158128.1	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   *||||||||||||||=|||||||| targets:707   UGGCCAUGUUCGUUUGAUCCCAAA   730 Target Full Sequence	1.5	Zea mays mitochondrial import inner membrane translocase subunit tim22 (LOC100285234), mRNA	NA	coding protein	psRNATarget
EU971368.1	ncRNA:24   UCCGGUACAAGCAAAUUAGGGUUU   1   *||||||||||||||=|||||||| targets:707   UGGCCAUGUUCGUUUGAUCCCAAA   730 Target Full Sequence	1.5	Zea mays clone 363071 mitochondrial import inner membrane translocase subunit tim22 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget