Search result

BaseInfo

ncRNA ID	novel_zma_miR8839
Species	Zea mays
Class	miRNA
Genome position	Chr2:141843915-141844051 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	114 - GUAGAACCGAACAAGCCCUUAAGG - 137
Stem-loop(if miRNA)	--UUU               -AU UU                GA    -A     ACGGA   G   GGA      AGGGCUUGUUUGGUU   U  CAAUCCAUAUGGAUUG  GGGG  UUGAU     UUG AGG   U      |||||||||||||||   |  ||||||||||||||||  ||||  |||||     ||| |||   U      UCCCGAACAAGCCAA   G  GUUAGGUAUACCUAAC  CCCC  AAUUA     AAC UUC   U GGAAU               GAU GG                UC    CA     --GGG   A   AGU
Stem-loop sequence	UUUAGGGCUUGUUUGGUUAUUUUCAAUCCAUAUGGAUUGGAGGGGAUUGAUACGGAUUGGAGGGGAUUUUGACUUACAAGGGAUUAAACCCCCCUCAAUCCAUAUGGAUUGGGGUAGAACCGAACAAGCCCUUAAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU956568.1	ncRNA:24   GG-AAUUCCCGAACAAGCCAAGAUG   1   ||-||=||||||||||||||||||| targets:1532   CCAUUGAGGGCUUGUUCGGUUCUAC   1556 Target Full Sequence	0.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EZ061352.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   ||*|=||||||||||||||||||| targets:101   CCAUGAGGGCUUGUUCGGUUCUAC   124 Target Full Sequence	0.0	TSA: Zea mays contig62474, mRNA sequence	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   ||||*=|||||||||||||||||| targets:348   CCUUUGGGGCUUGUUCGGUUCUAC   371 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_008673290.2	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   |||-|||||||||||||||||||| targets:1894   CCU-AAGGGCUUGUUCGGUUCUAC   1916 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA	NA	coding protein	psRNATarget
XM_020548987.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   |||-|||||||||||||||||||| targets:1894   CCU-AAGGGCUUGUUCGGUUCUAC   1916 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA	NA	coding protein	psRNATarget
XM_008672211.2	ncRNA:24   GGA-AUUCCCGAACAAGCCAAGAUG   1   |||-||*|||||||||||||||||| targets:873   CCUCUACGGGCUUGUUCGGUUCUAC   897 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672210.2	ncRNA:24   GGA-AUUCCCGAACAAGCCAAGAUG   1   |||-||*|||||||||||||||||| targets:1665   CCUCUACGGGCUUGUUCGGUUCUAC   1689 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100277216 (LOC100277216), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062922.1	ncRNA:24   GGA---AUUCCCGAACAAGCCAAGAUG   1   *||---|=||||||||||||||||||| targets:826   ACUAGCUGAGGGCUUGUUCGGUUCUAC   852 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0007N17 mRNA, complete cds	NA	coding protein	psRNATarget
EU959053.1	ncRNA:24   GGA---AUUCCCGAACAAGCCAAGAUG   1   *||---|=||||||||||||||||||| targets:772   ACUAGCUGAGGGCUUGUUCGGUUCUAC   798 Target Full Sequence	0.0	Zea mays clone 209789 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959258.1	ncRNA:24   GGA---AUUCCCGAACAAGCCAAGAUG   1   *||---|=||||||||||||||||||| targets:772   ACUAGCUGAGGGCUUGUUCGGUUCUAC   798 Target Full Sequence	0.0	Zea mays clone 213262 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
EU959345.1	ncRNA:24   GGA---AUUCCCGAACAAGCCAAGAUG   1   *||---|=||||||||||||||||||| targets:773   ACUAGCUGAGGGCUUGUUCGGUUCUAC   799 Target Full Sequence	0.0	Zea mays clone 217290 mitochondrial import inner membrane translocase subunit tim23 mRNA, complete cds; nuclear gene for mitochondrial product	NA	coding protein	psRNATarget
XM_008666525.2	ncRNA:24   GGA---AUUCCCGAACAAGCCAAGAUG   1   *||---|=||||||||||||||||||| targets:845   ACUAGCUGAGGGCUUGUUCGGUUCUAC   871 Target Full Sequence	0.0	PREDICTED: Zea mays mitochondrial import inner membrane translocase subunit TIM23-1 (LOC100282051), mRNA	NA	coding protein	psRNATarget
EZ094106.1	ncRNA:24   GGAAUUCCC--GAACAAGCCAAGAUG   1   **|||||||--||||||||||||||| targets:46   AAUUAAGGGGCCUUGUUCGGUUCUAC   71 Target Full Sequence	2.5	TSA: Zea mays contig29758, mRNA sequence	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   ||||*||||||||||||*|||||| targets:3023   CCUUUAGGGCUUGUUCGUUUCUAC   3046 Target Full Sequence	1.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:24   GGAAUUC-CCGAACAAGCCAAGAUG   1   =|||||*-||||||||||||||||| targets:879   UCUUAAAUGGCUUGUUCGGUUCUAC   903 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT064935.1	ncRNA:24   GGA--AUUCCCGAACAAGCCAAGAUG   1   =||--|*||||||||||||||||||| targets:739   UCUCCUCAGGGCUUGUUCGGUUCUAC   764 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0035J15 mRNA, complete cds	NA	coding protein	psRNATarget
EU959055.1	ncRNA:24   GGA---AUUCCCGAACAAGCCAAGAUG   1   *||---|=|||||||||||||||*||| targets:774   ACUAGCUGAGGGCUUGUUCGGUUYUAC   800 Target Full Sequence	1.5	Zea mays clone 209821 mRNA sequence	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   GGA--AUUCCCGAACAAGCCAAGAUG   1   =||--|*||||||||||||||||||| targets:910   UCUCCUCAGGGCUUGUUCGGUUCUAC   935 Target Full Sequence	0.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
NM_001156482.1	ncRNA:24   GGA--AUUCCCGAACAAGCCAAGAUG   1   =||--|*||||||||||||||||||| targets:790   UCUCCUCAGGGCUUGUUCGGUUCUAC   815 Target Full Sequence	0.0	Zea mays threonine endopeptidase (LOC100283581), mRNA	NA	coding protein	psRNATarget
EU965203.1	ncRNA:24   GGA--AUUCCCGAACAAGCCAAGAUG   1   =||--|*||||||||||||||||||| targets:790   UCUCCUCAGGGCUUGUUCGGUUCUAC   815 Target Full Sequence	0.0	Zea mays clone 284456 threonine endopeptidase mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   *|*|||||||||||||||||*||| targets:1334   GCGUAAGGGCUUGUUCGGUUAUAC   1357 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
BT040193.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   *|*|||||||||||||||||*||| targets:1378   GCGUAAGGGCUUGUUCGGUUAUAC   1401 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
AY105910.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   *|*|||||||||||||||||*||| targets:1396   GCGUAAGGGCUUGUUCGGUUAUAC   1419 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   *|*|||||||||||||||||*||| targets:1410   GCGUAAGGGCUUGUUCGGUUAUAC   1433 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
BT041454.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   *|*|||||||||||||||||*||| targets:1410   GCGUAAGGGCUUGUUCGGUUAUAC   1433 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   |**|||*||||||||||||||||| targets:1032   CAGUAAAGGCUUGUUCGGUUCUAC   1055 Target Full Sequence	1.0	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   |**|||||||||||||||||||*| targets:949   CAGUAAGGGCUUGUUCGGUUCUCC   972 Target Full Sequence	1.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   |**|||||||||||||||||||*| targets:987   CAGUAAGGGCUUGUUCGGUUCUCC   1010 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
HI407312.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   =*||||||||*|||||||||*||| targets:9   UGUUAAGGGCCUGUUCGGUUGUAC   32 Target Full Sequence	2.5	Sequence 5437 from Patent EP2074227	NA	coding protein	psRNATarget
JB167773.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   =*||||||||*|||||||||*||| targets:9   UGUUAAGGGCCUGUUCGGUUGUAC   32 Target Full Sequence	2.5	Sequence 5437 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239442.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   =*||||||||*|||||||||*||| targets:9   UGUUAAGGGCCUGUUCGGUUGUAC   32 Target Full Sequence	2.5	Sequence 5437 from Patent EP2985353	NA	coding protein	psRNATarget
JB163483.1	ncRNA:20   UUCCCGAACAAGCCAAGAUG   1   ||||||||||||||||*||| targets:1   AAGGGCUUGUUCGGUUGUAC   20 Target Full Sequence	1.5	Sequence 1147 from Patent EP2559767	NA	coding protein	psRNATarget
HI403022.1	ncRNA:20   UUCCCGAACAAGCCAAGAUG   1   ||||||||||||||||*||| targets:1   AAGGGCUUGUUCGGUUGUAC   20 Target Full Sequence	1.5	Sequence 1147 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235152.1	ncRNA:20   UUCCCGAACAAGCCAAGAUG   1   ||||||||||||||||*||| targets:1   AAGGGCUUGUUCGGUUGUAC   20 Target Full Sequence	1.5	Sequence 1147 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020551773.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   =*||||||||*|||||||||*||| targets:2092   UGUUAAGGGCCUGUUCGGUUGUAC   2115 Target Full Sequence	2.5	PREDICTED: Zea mays putative disease resistance protein RGA1 (LOC109945454), mRNA	NA	coding protein	psRNATarget
EU948993.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   *|*|=|||||||||||||||*||= targets:499   ACGUGAGGGCUUGUUCGGUUAUAU   522 Target Full Sequence	2.5	Zea mays clone 393064 mRNA sequence	NA	coding protein	psRNATarget
EZ081763.1	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   =|||*|||*|*||||||||||||| targets:38   UCUUUAGGUCAUGUUCGGUUCUAC   61 Target Full Sequence	2.0	TSA: Zea mays contig17404, mRNA sequence	NA	coding protein	psRNATarget
XM_020549355.1	ncRNA:24   GGA------AUUCCCGAACAAGCCAAGAUG   1   |||------|*||||||||||||*|||||| targets:836   CCUGCACAGUUAGGGCUUGUUCGAUUCUAC   865 Target Full Sequence	1.5	PREDICTED: Zea mays succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial (LOC109944584), mRNA	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:24   GGA-AUUCCCGAACAAGCCAAGAUG   1   *||-|||||*|||||||||||*||| targets:1801   ACUCUAAGGUCUUGUUCGGUUAUAC   1825 Target Full Sequence	2.5	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:24   GGAAUUCCCGAACAAGCCAAGAUG   1   |**|==||||||||||||||*||| targets:1601   CACUGGGGGCUUGUUCGGUUAUAC   1624 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget
AY106286.2	ncRNA:24   GGA-AUUCCCGAACAAGCCAAGAUG   1   =||-|||||*|*||||||||||||* targets:815   UCUAUAAGGCCAUGUUCGGUUCUAA   839 Target Full Sequence	3.0	Zea mays PCO078601 mRNA sequence	NA	coding protein	psRNATarget