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BaseInfo

ncRNA ID	novel_zma_miR8836
Species	Zea mays
Class	miRNA
Genome position	Chr1:7959038-7959103 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	21
Mature sequence(if miRNA)	46 - CUCGGCGCUAAGAUCUAUGGC - 66
Stem-loop(if miRNA)	--                       ----    CG   CAUAGAUCUUGGCGCCGAGGUAG    CCGG  U   |||||||||||||||||||||||    ||||   GUAUCUAGAAUCGCGGCUCCAUC    GGCC  U CG                       CGCG    AG
Stem-loop sequence	CAUAGAUCUUGGCGCCGAGGUAGCCGGCGUUGACCGGGCGCCUACCUCGGCGCUAAGAUCUAUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166443.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:74   GCCAUAGAUCUUGGCGCCGAG   94 Target Full Sequence	1.5	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
HI405982.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:74   GCCAUAGAUCUUGGCGCCGAG   94 Target Full Sequence	1.5	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:74   GCCAUAGAUCUUGGCGCCGAG   94 Target Full Sequence	1.5	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543535.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:292   GCCAUAGAUCUUGGCGCCGAG   312 Target Full Sequence	1.5	PREDICTED: Zea mays proline-rich protein HaeIII subfamily 1-like (LOC109942121), mRNA	NA	coding protein	psRNATarget
XM_020538144.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:115   GCCAUAGAUCUUGGCGCCGAG   135 Target Full Sequence	1.5	PREDICTED: Zea mays pEARLI1-like lipid transfer protein 1 (LOC103628601), mRNA	NA	coding protein	psRNATarget
XM_008678030.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:13   GCCAUAGAUCUUGGCGCCGAG   33 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103652452 (LOC103652452), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:14   GCCAUAGAUCUUGGCGCCGAG   34 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:171   GCCAUAGAUCUUGGCGCCGAG   191 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:171   GCCAUAGAUCUUGGCGCCGAG   191 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:171   GCCAUAGAUCUUGGCGCCGAG   191 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:175   GCCAUAGAUCUUGGCGCCGAG   195 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:175   GCCAUAGAUCUUGGCGCCGAG   195 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:240   GCCAUAGAUCUUGGCGCCGAG   260 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:947   GCCAUAGAUCUUGGCGCCGAG   967 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
BT038470.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1684   GCCAUAGAUCUUGGCGCCGAG   1704 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0274N23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001146799.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1684   GCCAUAGAUCUUGGCGCCGAG   1704 Target Full Sequence	1.5	Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), mRNA	NA	coding protein	psRNATarget
XM_008666663.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:792   GCCAUAGAUCUUGGCGCCGAG   812 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1766   GCCAUAGAUCUUGGCGCCGAG   1786 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1791   GCCAUAGAUCUUGGCGCCGAG   1811 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1798   GCCAUAGAUCUUGGCGCCGAG   1818 Target Full Sequence	1.5	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:140   GCCAUAGAUCUUGGCGCCGAG   160 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1232   GCCAUAGAUCUUGGCGCCGAG   1252 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:138   GCCAUAGAUCUUGGCGCCGAG   158 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1230   GCCAUAGAUCUUGGCGCCGAG   1250 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:198   GCCAUAGAUCUUGGCGCCGAG   218 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1289   GCCAUAGAUCUUGGCGCCGAG   1309 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:198   GCCAUAGAUCUUGGCGCCGAG   218 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||| targets:1289   GCCAUAGAUCUUGGCGCCGAG   1309 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544775.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||* targets:73   GCCAUAGAUCUUGGCGCCGAC   93 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC109942650), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||* targets:139   GCCAUAGAUCUUGGCGCCGAC   159 Target Full Sequence	2.5	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||* targets:139   GCCAUAGAUCUUGGCGCCGAC   159 Target Full Sequence	2.5	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||||||||||=|||||||* targets:301   GCCAUAGAUCUUGGCGCCGAC   321 Target Full Sequence	2.5	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
BT034188.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||*|||||||=|||||||| targets:766   GCCACAGAUCUUGGCGCCGAG   786 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137355.1	ncRNA:21   CGGUAUCUAGAAUCGCGGCUC   1   ||||*|||||||=|||||||| targets:766   GCCACAGAUCUUGGCGCCGAG   786 Target Full Sequence	2.5	Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA	NA	coding protein	psRNATarget