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BaseInfo

ncRNA ID	novel_zma_miR8835
Species	Zea mays
Class	miRNA
Genome position	Chr1:87060048-87060152 [+]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237224;SRR4237225
Length	22
Mature sequence(if miRNA)	84 - CUAAGGAACUCCAUAUAAUCAC - 105
Stem-loop(if miRNA)	--      -    ACA   UC   ACC        UUUUU    -  -AAA     AA   GGUUAU UGGA   UUU  UGG   GCAAUGCA     GAAA CA    UCCAU  U   |||||| ||||   |||  |||   ||||||||     |||| ||    |||||   CUAAUA ACCU   AAG  AUC   CGUUACGU     CUUU GU    AGGUA  G CA      U    --C   GA   --A        ----U    C  CCUA     AC
Stem-loop sequence	GGUUAUUGGAACAUUUUCUGGACCGCAAUGCAUUUUUGAAACAAAAUCCAUAAUGCAAUGGAAUCCUGCUUUCUUGCAUUGCACUAAGGAACUCCAUAUAAUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008667380.2	ncRNA:22   CACUAAUAUACCUCAAGGAAUC   1   ||||*||||||||||||||||| targets:826   GUGAAUAUAUGGAGUUCCUUAG   847 Target Full Sequence	1.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 5-like (LOC103644186), mRNA	NA	coding protein	psRNATarget
XM_020548800.1	ncRNA:22   CACUAAUAUACCUCAAGGAAUC   1   **||*||*|||||||||||||| targets:139   CAGAAUACAUGGAGUUCCUUAG   160 Target Full Sequence	2.0	PREDICTED: Zea mays protein FAR-RED IMPAIRED RESPONSE 1-like (LOC109944131), mRNA	NA	coding protein	psRNATarget
BT024110.1	ncRNA:22   CACUAAUAUACCUCAAGGAAUC   1   *||*|*|*|||||||||||||| targets:931   CUGCUGAAAUGGAGUUCCUUAG   952 Target Full Sequence	3.0	Zea mays clone EL01N0515D05 mRNA sequence	NA	coding protein	psRNATarget
AY108212.1	ncRNA:22   CACUAAUAUACCUCAAGGAAUC   1   *||*|*|*|||||||||||||| targets:400   CUGCUGAAAUGGAGUUCCUUAG   421 Target Full Sequence	3.0	Zea mays PCO110549 mRNA sequence	NA	coding protein	psRNATarget
KJ728353.1	ncRNA:22   CACUAAUAUACCUCAAGGAAUC   1   *||*|*|*|||||||||||||| targets:752   CUGCUGAAAUGGAGUUCCUUAG   773 Target Full Sequence	3.0	Zea mays clone pUT6635 bZIP transcription factor (bZIP119) mRNA, partial cds	NA	coding protein	psRNATarget
EU975102.1	ncRNA:22   CACUAAUAUACCUCAAGGAAUC   1   *||*|*|*|||||||||||||| targets:1015   CUGCUGAAAUGGAGUUCCUUAG   1036 Target Full Sequence	3.0	Zea mays clone 469036 DNA binding protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158889.1	ncRNA:22   CACUAAUAUACCUCAAGGAAUC   1   *||*|*|*|||||||||||||| targets:1015   CUGCUGAAAUGGAGUUCCUUAG   1036 Target Full Sequence	3.0	Zea mays uncharacterized LOC100286001 (pco110549), mRNA	NA	coding protein	psRNATarget