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BaseInfo

ncRNA ID	novel_zma_miR8828
Species	Zea mays
Class	miRNA
Genome position	Chr3:16848166-16848292 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	24
Mature sequence(if miRNA)	104 - ACCGGACUGUUCGGUGUGCAUCGG - 127
Stem-loop(if miRNA)	--   G UG        U        AG  -----A  G  C   CG     A  -    GC     A   GGU G  CACCGGAC GUCCGGUG  CC      AC GU GGU  GGCCA CG GUCG  CGCGU A   ||| |  |||||||| ||||||||  ||      || || |||  ||||| || ||||  ||||| U   CUA C  GUGGCUUG CAGGCCAC  GG      UG CA CCG  CCGGU GC CAGU  GCGCG C GG   - GU        U        GG  GAAGAC  G  A   AG     -  G    --     C
Stem-loop sequence	GGUGGUGCACCGGACUGUCCGGUGAGCCAACGGUCGGUCGGGCCAACGGUCGGCCGCGUAAUCCGCGCGUGACGCGUGGCCGAGCCAACGGUCAGAAGGGGGCACCGGACUGUUCGGUGUGCAUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI410048.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:108   CCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.5	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242178.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:108   CCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.5	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
JB170509.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:108   CCGGUGCACACCGGACAGUCCGGU   131 Target Full Sequence	1.5	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:469   CCGGUGCACACCGGACAGUCCGGU   492 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:599   CCGGUGCACACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |=|--||=|||||=|||||||||| targets:376   CUG--GCGCACCGGACAGUCCGGU   397 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:741   CCGGUGCACACCGGACAGUCCGGU   764 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:621   CCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:735   CCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:621   CCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:735   CCGGUGCACACCGGACAGUCCGGU   758 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:713   CCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:713   CCGGUGCACACCGGACAGUCCGGU   736 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:282   CCGGUGCACACCGGACAGUCCGGU   305 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:696   CCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:696   CCGGUGCACACCGGACAGUCCGGU   719 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:446   CCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:560   CCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:446   CCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:560   CCGGUGCACACCGGACAGUCCGGU   583 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:408   CCGGUGCACACCGGACAGUCCGGU   431 Target Full Sequence	1.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   *||=|||||||||=|||||||||| targets:294   ACGGUGCACACCGGACAGUCCGGU   317 Target Full Sequence	1.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:1398   CCGGUGCACACCGGACAGUCCGGU   1421 Target Full Sequence	1.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:4493   CCGGUGCACACCGGACAGUCCGGU   4516 Target Full Sequence	1.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=|||||||||=|||||||||| targets:4608   CCGGUGCACACCGGACAGUCCGGU   4631 Target Full Sequence	1.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
HI409351.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=||=||||||=|||||||||| targets:29   CCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 7476 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241481.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=||=||||||=|||||||||| targets:29   CCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 7476 from Patent EP2985353	NA	coding protein	psRNATarget
JB169812.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |||=||=||||||=|||||||||| targets:29   CCGGUGUACACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 7476 from Patent EP2559767	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   GGCUAC-GUGUGGCUUGUCAGGCCA   1   |=||*|-|*|||||||||||||||| targets:745   CUGAAGACUCACCGAACAGUCCGGU   769 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |=|--||=|||||=|||||||||| targets:780   CUG--GCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |=|--||=|||||=|||||||||| targets:780   CUG--GCGCACCGGACAGUCCGGU   801 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |=|--||||||||=|||||||||| targets:12   CUG--GCACACCGGACAGUCCGGU   33 Target Full Sequence	1.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |=|--||||||||=|||||||||| targets:12   CUG--GCACACCGGACAGUCCGGU   33 Target Full Sequence	1.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   |=|--||||||||=|||||||||| targets:12   CUG--GCACACCGGACAGUCCGGU   33 Target Full Sequence	1.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   =*|**||*|||||=|||||||||| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   =*|**||*|||||=|||||||||| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   GGCUACGUGUGGCUUGUCAGGCCA   1   =*|**||*|||||=|||||||||| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget