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BaseInfo

ncRNA ID	novel_zma_miR8823
Species	Zea mays
Class	miRNA
Genome position	Chr1:109418165-109418340 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - AAAUUAGUCCGUAGAAACCAAACA - 24
Stem-loop(if miRNA)	--    A     UG               UC   ----------        U          C          U     C     CC    C   UUUG UUUUU  GGAUUAAUUUUUAGU  CUC          CAUUUUAU CUAUUUUAGU UCUAAAUUGC AAAUG AGAAA  AAAA U   |||| |||||  |||||||||||||||  |||          |||||||| |||||||||| |||||||||| ||||| |||||  |||| C   AAAC AAAGA  CCUGAUUAAAAAUCA  GAG          GUAAAAUA GAUAAAAUCA AGAUUUAACG UUUAU UUUUU  UUUU U AC    C     UG               GA   AUAAAAUAAA        -          U          U     A     AA    A
Stem-loop sequence	UUUGAUUUUUUGGGAUUAAUUUUUAGUUCCUCCAUUUUAUUCUAUUUUAGUCUCUAAAUUGCUAAAUGCAGAAACCAAAACUCUAUUUUAAUUUUUAUAUUUUGCAAUUUAGAUACUAAAAUAGAUAAAAUGAAAUAAAAUAGAGAGACUAAAAAUUAGUCCGUAGAAACCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ092607.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||=||=|||||||||| targets:59   UGUUUGGUUUUUAUGGACUAAUUU   82 Target Full Sequence	2.5	TSA: Zea mays contig28256, mRNA sequence	NA	coding protein	psRNATarget
EU941753.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:6   UGUUUGGUUUCUAGGGACUAAUUU   29 Target Full Sequence	1.5	Zea mays clone 1469712 mRNA sequence	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:553   UGUUUGGUUUCUAGGGACUAAUUU   576 Target Full Sequence	1.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT018349.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:561   UGUUUGGUUUCUAGGGACUAAUUU   584 Target Full Sequence	1.5	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:816   UGUUUGGUUUCUAGGGACUAAUUU   839 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:816   UGUUUGGUUUCUAGGGACUAAUUU   839 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001313850.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:1140   UGUUUGGUUUCUAGGGACUAAUUU   1163 Target Full Sequence	1.5	Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA	NA	coding protein	psRNATarget
BT088358.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:1140   UGUUUGGUUUCUAGGGACUAAUUU   1163 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds	NA	coding protein	psRNATarget
BT085047.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:1194   UGUUUGGUUUCUAGGGACUAAUUU   1217 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008655750.2	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:2416   UGUUUGGUUUCUAAGGACUAAUUU   2439 Target Full Sequence	1.5	PREDICTED: Zea mays PHD finger protein MALE STERILITY 1-like (LOC103643406), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546796.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:3405   UGUUUGGUUUCUAGGGACUAAUUU   3428 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546795.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:3480   UGUUUGGUUUCUAGGGACUAAUUU   3503 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546794.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:3530   UGUUUGGUUUCUAGGGACUAAUUU   3553 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546793.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:3567   UGUUUGGUUUCUAGGGACUAAUUU   3590 Target Full Sequence	1.5	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||||||*|||||||||| targets:1923   UGUUUGGUUUCUAGGGACUAAUUU   1946 Target Full Sequence	1.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ111881.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||=||*|||||||||| targets:85   UGUUUGGUUUUUAGGGACUAAUUU   108 Target Full Sequence	2.5	TSA: Zea mays contig47542, mRNA sequence	NA	coding protein	psRNATarget
XM_020549827.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||=||*|||||||||| targets:1848   UGUUUGGUUUUUAGGGACUAAUUU   1871 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008682706.2	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||=||*|||||||||| targets:2256   UGUUUGGUUUUUAGGGACUAAUUU   2279 Target Full Sequence	2.5	PREDICTED: Zea mays protein phosphatase 2C (LOC100286089), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674864.2	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||=||*|||||||||| targets:2223   UGUUUGGUUUUUAGGGACUAAUUU   2246 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001174508.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||=||*|||||||||| targets:2282   UGUUUGGUUUUUAGGGACUAAUUU   2305 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100381696), mRNA	NA	coding protein	psRNATarget
BT062019.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||=||*|||||||||| targets:2282   UGUUUGGUUUUUAGGGACUAAUUU   2305 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds	NA	coding protein	psRNATarget
BT084832.2	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||*|||*|||||||||| targets:503   UGUUUGGUUACUAGGGACUAAUUU   526 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0189L01 mRNA, complete cds	NA	coding protein	psRNATarget
EU957896.1	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   ||||||||||*||*|||||||||| targets:1244   UGUUUGGUUUAUAGGGACUAAUUU   1267 Target Full Sequence	2.5	Zea mays clone 1630391 mRNA sequence	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||*|||*|||||||||| targets:2574   UGUUUGGUUACUAGGGACUAAUUU   2597 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:24   ACAAACCAAAGAUGCCUGAUUAAA   1   |||||||||*|||*|||||||||| targets:2963   UGUUUGGUUACUAGGGACUAAUUU   2986 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget