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BaseInfo

ncRNA ID novel_zma_miR8820
Species Zea mays
Class miRNA
Genome position Chr1:130831172-130831242 [-]
Reference genome RefGen_v4
Source SRR4237221;SRR5100255;SRR5105963
Length 24
Mature sequence(if miRNA) 1 - ACGAGAUCGAGUCUGGAGCGAGCU - 24
Stem-loop(if miRNA) -C    U     -  -   C     GG    CU  AU
  UUUG CUUCA AC CGA UCUUG  GUUU  UG  G
  |||| ||||| || ||| |||||  ||||  ||
  GAGC GAGGU UG GCU AGAGC  UAAG  AU  A
UC    -     C  A   -     AG    AC  GC
Stem-loop sequence CUUUGUCUUCAACCGACUCUUGGGGUUUCUUGAUGACGUACAGAAUGACGAGAUCGAGUCUGGAGCGAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ051671.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:610   AGCUCGCUCCAGACUCGAUCUCGU   633

0.0 TSA: Zea mays contig52791, mRNA sequence NA coding protein psRNATarget
EU956050.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:776   AGCUCGCUCCAGACUCGAUCUCGU   799

0.0 Zea mays clone 1556255 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149523.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:776   AGCUCGCUCCAGACUCGAUCUCGU   799

0.0 Zea mays uncharacterized LOC100275456 (LOC100275456), mRNA NA coding protein psRNATarget
EU954678.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:823   AGCUCGCUCCAGACUCGAUCUCGU   846

0.0 Zea mays clone 1476744 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT065072.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:1000   AGCUCGCUCCAGACUCGAUCUCGU   1023

0.0 Zea mays full-length cDNA clone ZM_BFb0161I11 mRNA, complete cds NA coding protein psRNATarget
NM_001175421.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:1000   AGCUCGCUCCAGACUCGAUCUCGU   1023

0.0 Zea mays uncharacterized LOC100382697 (LOC100382697), mRNA NA coding protein psRNATarget
EU971485.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:1344   AGCUCGCUCCAGACUCGAUCUCGU   1367

0.0 Zea mays clone 366005 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001151400.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:1344   AGCUCGCUCCAGACUCGAUCUCGU   1367

0.0 Zea mays uncharacterized LOC100277967 (LOC100277967), mRNA NA coding protein psRNATarget
XM_020547626.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||||||||
targets:1521   AGCUCGCUCCAGACUCGAUCUCGU   1544

0.0 PREDICTED: Zea mays uncharacterized LOC100277967 (LOC100277967), transcript variant X1, mRNA NA coding protein psRNATarget
BT062464.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||=||||||||||||||
targets:1327   AGCUCGCUCUAGACUCGAUCUCGU   1350

1.0 Zea mays full-length cDNA clone ZM_BFb0301K12 mRNA, complete cds NA coding protein psRNATarget
NM_001174651.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||=||||||||||||||
targets:1327   AGCUCGCUCUAGACUCGAUCUCGU   1350

1.0 Zea mays uncharacterized LOC100381865 (LOC100381865), mRNA NA coding protein psRNATarget
EU970329.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||||||||=||||||||
targets:1239   AGCUCGCUCCAGACUUGAUCUCGU   1262

1.5 Zea mays clone 343421 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU953379.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||||||||=||||||||
targets:1283   AGCUCGCUCCAGACUUGAUCUCGU   1306

1.5 Zea mays clone 1404812 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149143.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||||||||=||||||||
targets:1283   AGCUCGCUCCAGACUUGAUCUCGU   1306

1.5 Zea mays hypothetical protein (LOC100274884), mRNA NA coding protein psRNATarget
XM_008670804.2
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||||||||=||||||||
targets:1521   AGCUCGCUCCAGACUUGAUCUCGU   1544

1.5 PREDICTED: Zea mays hypothetical protein (LOC100274884), transcript variant X1, mRNA NA coding protein psRNATarget
EU960111.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  *|||||||||||||||||||||||
targets:502   CGCUCGCUCCAGACUCGAUCUCGU   525

0.0 Zea mays clone 221830 mRNA sequence NA coding protein psRNATarget
BT054984.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  *|||||||||||||||||||||||
targets:675   CGCUCGCUCCAGACUCGAUCUCGU   698

0.0 Zea mays full-length cDNA clone ZM_BFc0166M02 mRNA, complete cds NA coding protein psRNATarget
XM_008661196.2
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  *|||||||||||||||||||||||
targets:776   CGCUCGCUCCAGACUCGAUCUCGU   799

0.0 PREDICTED: Zea mays uncharacterized LOC103638202 (LOC103638202), transcript variant X1, mRNA NA coding protein psRNATarget
EU943642.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||=|||=|||||||||||||||
targets:285   AGCUUGCUUCAGACUCGAUCUCGU   308

1.0 Zea mays clone 1670632 mRNA sequence NA coding protein psRNATarget
NM_001138549.2
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||=||||||=||||||||||||||
targets:1020   AGUUCGCUCUAGACUCGAUCUCGU   1043

1.0 Zea mays uncharacterized LOC100193427 (LOC100193427), mRNA NA coding protein psRNATarget
BT035688.2
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||=||||||=||||||||||||||
targets:1020   AGUUCGCUCUAGACUCGAUCUCGU   1043

1.0 Zea mays full-length cDNA clone ZM_BFb0077B17 mRNA, complete cds NA coding protein psRNATarget
EZ058923.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||*||||||||||||||||||
targets:124   AGCUCACUCCAGACUCGAUCUCGU   147

1.0 TSA: Zea mays contig60045, mRNA sequence NA coding protein psRNATarget
BT034723.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||*|||||||||||||||
targets:768   AGCUCGCUGCAGACUCGAUCUCGU   791

1.0 Zea mays full-length cDNA clone ZM_BFb0013L07 mRNA, complete cds NA coding protein psRNATarget
BT054202.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||||||||||*||||||
targets:875   AGCUCGCUCCAGACUCGCUCUCGU   898

1.5 Zea mays full-length cDNA clone ZM_BFb0166A18 mRNA, complete cds NA coding protein psRNATarget
NM_001152427.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||||||||||*||||||
targets:875   AGCUCGCUCCAGACUCGCUCUCGU   898

1.5 Zea mays uncharacterized LOC100279415 (LOC100279415), mRNA NA coding protein psRNATarget
BT067934.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||*||||||||||||||||||
targets:1143   AGCUCACUCCAGACUCGAUCUCGU   1166

1.0 Zea mays full-length cDNA clone ZM_BFb0002K07 mRNA, complete cds NA coding protein psRNATarget
NM_001176288.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||*||||||||||||||||||
targets:1143   AGCUCACUCCAGACUCGAUCUCGU   1166

1.0 Zea mays uncharacterized LOC100383643 (LOC100383643), mRNA NA coding protein psRNATarget
EU956544.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||*|||||||||||||
targets:1051   AGCUCGCUCCUGACUCGAUCUCGU   1074

1.0 Zea mays clone 1565830 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001165492.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||*|||||||||||||
targets:1051   AGCUCGCUCCUGACUCGAUCUCGU   1074

1.0 Zea mays uncharacterized LOC100303911 (LOC100303911), mRNA NA coding protein psRNATarget
EU956536.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||*|||||||||||||
targets:1051   AGCUCGCUCCUGACUCGAUCUCGU   1074

1.0 Zea mays clone 1565678 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU943157.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||*|||||||
targets:1155   AGCUCGCUCCAGACUCAAUCUCGU   1178

1.5 Zea mays clone 1572219 mRNA sequence NA coding protein psRNATarget
NM_001175946.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||=||||*|||||||||
targets:1320   AGCUCGCUCUAGACACGAUCUCGU   1343

2.5 Zea mays uncharacterized LOC100383286 (LOC100383286), mRNA NA coding protein psRNATarget
BT066793.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||||||=||||*|||||||||
targets:1320   AGCUCGCUCUAGACACGAUCUCGU   1343

2.5 Zea mays full-length cDNA clone ZM_BFb0067J13 mRNA, complete cds NA coding protein psRNATarget
NM_001175783.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||*||||*
targets:524   AGCUCGCUCCAGACUCGACCUCGC   547

2.5 Zea mays uncharacterized LOC100383116 (LOC100383116), mRNA NA coding protein psRNATarget
BT066222.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  ||||||||||||||||||*||||*
targets:524   AGCUCGCUCCAGACUCGACCUCGC   547

2.5 Zea mays full-length cDNA clone ZM_BFc0105C05 mRNA, complete cds NA coding protein psRNATarget
EU942484.1
ncRNA:24   UCGAGCGAGGUCUGAGCUAGAGCA   1
  |||||*|||||*||||||||||||
targets:261   AGCUCACUCCAAACUCGAUCUCGU   284

2.5 Zea mays clone 1509410 mRNA sequence NA coding protein psRNATarget
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