Search result

BaseInfo

ncRNA ID	novel_zma_miR8817
Species	Zea mays
Class	miRNA
Genome position	Chr10:133461565-133461643 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - AUAGAUCUUGGCGCCGACCCCCUU - 24
Stem-loop(if miRNA)	--                                  CCA   GGGGGUCGGCGCCAAGAUCUAUGGUGCCGACCCC   C   ||||||||||||||||||||||||||||||||||   G   CCCCCAGCCGCGGUUCUAGAUACCGCGGCUGGGG   C UU                                  CCG
Stem-loop sequence	GGGGGUCGGCGCCAAGAUCUAUGGUGCCGACCCCCCACGCGCCGGGGUCGGCGCCAUAGAUCUUGGCGCCGACCCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU959730.1	ncRNA:24   UUCCCC-CAGCCGCGGUUCUAGAUA   1   ||||||-|||||||||||||||||| targets:1513   AAGGGGUGUCGGCGCCAAGAUCUAU   1537 Target Full Sequence	2.0	Zea mays clone 219696 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149941.1	ncRNA:24   UUCCCC-CAGCCGCGGUUCUAGAUA   1   ||||||-|||||||||||||||||| targets:1513   AAGGGGUGUCGGCGCCAAGAUCUAU   1537 Target Full Sequence	2.0	Zea mays Core-2/I-branching beta-16-N-acetylglucosaminyltransferase family protein (LOC100276060), mRNA	NA	coding protein	psRNATarget
XM_020541155.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *||||||||||||||||||||||* targets:67   CAGGGGGUCGGCGCCAAGAUCUAC   90 Target Full Sequence	1.0	PREDICTED: Zea mays basic proline-rich protein-like (LOC109940831), mRNA	NA	coding protein	psRNATarget
XM_020545863.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *||||||||||||||||||||||* targets:67   CAGGGGGUCGGCGCCAAGAUCUAC   90 Target Full Sequence	1.0	PREDICTED: Zea mays serine/arginine repetitive matrix protein 1-like (LOC109943065), mRNA	NA	coding protein	psRNATarget
XM_020547098.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *||||||||||||||||||||||* targets:67   CAGGGGGUCGGCGCCAAGAUCUAC   90 Target Full Sequence	1.0	PREDICTED: Zea mays vegetative cell wall protein gp1-like (LOC103637036), mRNA	NA	coding protein	psRNATarget
XM_020538176.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   ***||||||||||||||||||||| targets:346   UCAGGGGUCGGCGCCAAGAUCUAU   369 Target Full Sequence	0.0	PREDICTED: Zea mays pollen-specific leucine-rich repeat extensin-like protein 1 (LOC109939828), mRNA	NA	coding protein	psRNATarget
HI405982.1	ncRNA:24   UUCCCCC-AGCCGCGGUUCUAGAUA   1   *|||**|-||||||||||||||||| targets:141   CAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	3.0	Sequence 4107 from Patent EP2074227	NA	coding protein	psRNATarget
JB166443.1	ncRNA:24   UUCCCCC-AGCCGCGGUUCUAGAUA   1   *|||**|-||||||||||||||||| targets:141   CAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	3.0	Sequence 4107 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238112.1	ncRNA:24   UUCCCCC-AGCCGCGGUUCUAGAUA   1   *|||**|-||||||||||||||||| targets:141   CAGGUAGCUCGGCGCCAAGAUCUAU   165 Target Full Sequence	3.0	Sequence 4107 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020547329.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   |**|*|*||||||||||||||||| targets:1834   AUCGAGCUCGGCGCCAAGAUCUAU   1857 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020547327.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   |**|*|*||||||||||||||||| targets:1859   AUCGAGCUCGGCGCCAAGAUCUAU   1882 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008668082.2	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   |**|*|*||||||||||||||||| targets:1866   AUCGAGCUCGGCGCCAAGAUCUAU   1889 Target Full Sequence	1.0	PREDICTED: Zea mays Flavin-containing monooxygenase FMO GS-OX5 (LOC100272315), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB170356.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *=*|**|*|*|||||||||||||| targets:45   CGAGAUGCCAGCGCCAAGAUCUAU   68 Target Full Sequence	3.0	Sequence 8020 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242025.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *=*|**|*|*|||||||||||||| targets:45   CGAGAUGCCAGCGCCAAGAUCUAU   68 Target Full Sequence	3.0	Sequence 8020 from Patent EP2985353	NA	coding protein	psRNATarget
HI409895.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *=*|**|*|*|||||||||||||| targets:45   CGAGAUGCCAGCGCCAAGAUCUAU   68 Target Full Sequence	3.0	Sequence 8020 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008664820.2	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:10   GCCUACCUCGGCGCCAAGAUCUAU   33 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103641469 (LOC103641469), mRNA	NA	coding protein	psRNATarget
XM_020544295.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:55   GCCUACCUCGGCGCCAAGAUCUAU   78 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103644543 (LOC103644543), mRNA	NA	coding protein	psRNATarget
XM_020548134.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:32   GCCUACCUCGGCGCCAAGAUCUAU   55 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109943956 (LOC109943956), mRNA	NA	coding protein	psRNATarget
XM_020545943.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:212   GCCUACCUCGGCGCCAAGAUCUAU   235 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109943115 (LOC109943115), mRNA	NA	coding protein	psRNATarget
XM_020545942.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:212   GCCUACCUCGGCGCCAAGAUCUAU   235 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109943114 (LOC109943114), mRNA	NA	coding protein	psRNATarget
XM_008666282.2	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:212   GCCUACCUCGGCGCCAAGAUCUAU   235 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103643129 (LOC103643129), mRNA	NA	coding protein	psRNATarget
XM_020541347.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:216   GCCUACCUCGGCGCCAAGAUCUAU   239 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109940949 (LOC109940949), mRNA	NA	coding protein	psRNATarget
XM_008652363.2	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:216   GCCUACCUCGGCGCCAAGAUCUAU   239 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103631452 (LOC103631452), mRNA	NA	coding protein	psRNATarget
XM_020537732.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:281   GCCUACCUCGGCGCCAAGAUCUAU   304 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC109939552 (LOC109939552), mRNA	NA	coding protein	psRNATarget
XM_008654703.2	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   =******||||||||||||||||| targets:988   GCCUACCUCGGCGCCAAGAUCUAU   1011 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103633011 (LOC103633011), mRNA	NA	coding protein	psRNATarget
XM_008672912.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *****|*|||||||||||||||=| targets:366   UCCUAGCUCGGCGCCAAGAUCUGU   389 Target Full Sequence	2.5	PREDICTED: Zea mays glycine-rich protein DOT1-like (LOC103648440), mRNA	NA	coding protein	psRNATarget
XM_008652503.1	ncRNA:24   UUCCCCCAGCCGCGGUUCUAGAUA   1   *****|*|||||||||||||||=| targets:399   UCCUAGCUCGGCGCCAAGAUCUGU   422 Target Full Sequence	2.5	PREDICTED: Zea mays rRNA 2'-O-methyltransferase fibrillarin-like (LOC103631637), mRNA	NA	coding protein	psRNATarget