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BaseInfo

ncRNA ID	novel_zma_miR8816
Species	Zea mays
Class	miRNA
Genome position	Chr1:223305247-223305371 [-]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237222;SRR4237226
Length	24
Mature sequence(if miRNA)	1 - AUUCCAGUACAACCGAACAGGCCC - 24
Stem-loop(if miRNA)	--   A           -       UG     CC     AAU   U   -  GAUUACU   C  A   GCC UGUUCGGUUGU UUGGGAU  GAGCC  GGAUU   UCC AGC CG       UCU UA U   ||| ||||||||||| |||||||  |||||  |||||   ||| ||| ||       ||| || U   CGG ACAAGCCAACA GACCUUA  UUCGG  CCUAA   AGG UCG GU       AGA AU U CC   -           U       --     -U     GUU   -   A  -AGUUUU   U  A
Stem-loop sequence	GCCAUGUUCGGUUGUUUGGGAUUGGAGCCCCGGAUUAAUUCCUAGCCGGAUUACUUCUCUAAUUUAUAUAGAUUUUGAUGAGCUGGAUUGAAUCCUGGCUUAUUCCAGUACAACCGAACAGGCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402913.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||||||||||||||||*||||| targets:3   GGGCCUGUUCGGUUGUACCGGAAU   26 Target Full Sequence	1.5	Sequence 1038 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235043.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||||||||||||||||*||||| targets:3   GGGCCUGUUCGGUUGUACCGGAAU   26 Target Full Sequence	1.5	Sequence 1038 from Patent EP2985353	NA	coding protein	psRNATarget
JB163374.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||||||||||||||||*||||| targets:3   GGGCCUGUUCGGUUGUACCGGAAU   26 Target Full Sequence	1.5	Sequence 1038 from Patent EP2559767	NA	coding protein	psRNATarget
JB167773.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||||||||||||||||*||||| targets:15   GGGCCUGUUCGGUUGUACCGGAAU   38 Target Full Sequence	1.5	Sequence 5437 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239442.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||||||||||||||||*||||| targets:15   GGGCCUGUUCGGUUGUACCGGAAU   38 Target Full Sequence	1.5	Sequence 5437 from Patent EP2985353	NA	coding protein	psRNATarget
HI407312.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||||||||||||||||*||||| targets:15   GGGCCUGUUCGGUUGUACCGGAAU   38 Target Full Sequence	1.5	Sequence 5437 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020551773.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||||||||||||||||*||||| targets:2098   GGGCCUGUUCGGUUGUACCGGAAU   2121 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance protein RGA1 (LOC109945454), mRNA	NA	coding protein	psRNATarget
HI406047.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||=||||||||||||||*||||| targets:2   GGGUCUGUUCGGUUGUACCGGAAU   25 Target Full Sequence	1.5	Sequence 4172 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238177.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||=||||||||||||||*||||| targets:2   GGGUCUGUUCGGUUGUACCGGAAU   25 Target Full Sequence	1.5	Sequence 4172 from Patent EP2985353	NA	coding protein	psRNATarget
JB166508.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||=||||||||||||||*||||| targets:2   GGGUCUGUUCGGUUGUACCGGAAU   25 Target Full Sequence	1.5	Sequence 4172 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235152.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||=|||||||||||||*||||| targets:3   GGGCUUGUUCGGUUGUACCGGAAU   26 Target Full Sequence	1.5	Sequence 1147 from Patent EP2985353	NA	coding protein	psRNATarget
JB163483.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||=|||||||||||||*||||| targets:3   GGGCUUGUUCGGUUGUACCGGAAU   26 Target Full Sequence	1.5	Sequence 1147 from Patent EP2559767	NA	coding protein	psRNATarget
HI403022.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   ||||=|||||||||||||*||||| targets:3   GGGCUUGUUCGGUUGUACCGGAAU   26 Target Full Sequence	1.5	Sequence 1147 from Patent EP2074227	NA	coding protein	psRNATarget
EU951433.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||=||||||||||||||*||||| targets:1223   GGGUCUGUUCGGUUGUACCGGAAU   1246 Target Full Sequence	1.5	Zea mays clone 701850 mRNA sequence	NA	coding protein	psRNATarget
LQ238052.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||=||||||||||||||*||||* targets:3   GGGUCUGUUCGGUUGUACCGGAAC   26 Target Full Sequence	2.5	Sequence 4047 from Patent EP2985353	NA	coding protein	psRNATarget
JB166383.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||=||||||||||||||*||||* targets:3   GGGUCUGUUCGGUUGUACCGGAAC   26 Target Full Sequence	2.5	Sequence 4047 from Patent EP2559767	NA	coding protein	psRNATarget
HI405922.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||=||||||||||||||*||||* targets:3   GGGUCUGUUCGGUUGUACCGGAAC   26 Target Full Sequence	2.5	Sequence 4047 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235273.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||||*||||||||||||*||||| targets:85   GGGCCAGUUCGGUUGUACCGGAAU   108 Target Full Sequence	2.5	Sequence 1268 from Patent EP2985353	NA	coding protein	psRNATarget
HI403143.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||||*||||||||||||*||||| targets:85   GGGCCAGUUCGGUUGUACCGGAAU   108 Target Full Sequence	2.5	Sequence 1268 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235175.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||||*||||||||||||*||||| targets:85   GGGCCAGUUCGGUUGUACCGGAAU   108 Target Full Sequence	2.5	Sequence 1170 from Patent EP2985353	NA	coding protein	psRNATarget
JB163604.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||||*||||||||||||*||||| targets:85   GGGCCAGUUCGGUUGUACCGGAAU   108 Target Full Sequence	2.5	Sequence 1268 from Patent EP2559767	NA	coding protein	psRNATarget
HI403045.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||||*||||||||||||*||||| targets:85   GGGCCAGUUCGGUUGUACCGGAAU   108 Target Full Sequence	2.5	Sequence 1170 from Patent EP2074227	NA	coding protein	psRNATarget
JB163506.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||||*||||||||||||*||||| targets:85   GGGCCAGUUCGGUUGUACCGGAAU   108 Target Full Sequence	2.5	Sequence 1170 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001350330.1	ncRNA:24   CCCGGACAAGCCAACAUGACCUUA   1   |||||*||||||||||||*||||| targets:3167   GGGCCCGUUCGGUUGUACAGGAAU   3190 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191405 (LOC100191405), mRNA	NA	coding protein	psRNATarget