Search result

BaseInfo

ncRNA ID novel_zma_miR8811
Species Zea mays
Class miRNA
Genome position Chr1:33543747-33543870 [+]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 101 - AAUCCGGUACAAACGAACAAGACC - 124
Stem-loop(if miRNA) --C           ACG        --CACCA     -CG   C   UA UCAA     -A  U
   CUUGUUCGUUU   UCGGAUUG       GGAAU   UUC AGC  A    AGUUU  UA A
   |||||||||||   ||||||||       |||||   ||| |||  |    |||||  || A
   GAACAAGCAAA   GGCCUAAC       CCUUG   AAG UCG  U    UCAAG  AU U
CCA           CAU        UACCUAG     CUA   U   GC -UAA     AG  U
Stem-loop sequence CCUUGUUCGUUUACGUCGGAUUGCACCAGGAAUCGUUCCAGCUAAUCAAAGUUUAUAUAAUUUAGAGAACUAAUUCGGCUUGAAAUCGUUCCGAUCCAUCAAUCCGGUACAAACGAACAAGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI405951.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:8   GGUCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4076 from Patent EP2074227 NA coding protein psRNATarget
JB166412.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:8   GGUCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4076 from Patent EP2559767 NA coding protein psRNATarget
LQ238081.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:8   GGUCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4076 from Patent EP2985353 NA coding protein psRNATarget
LQ238060.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:12   GGUCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 4055 from Patent EP2985353 NA coding protein psRNATarget
JB166391.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:12   GGUCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 4055 from Patent EP2559767 NA coding protein psRNATarget
HI405930.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:12   GGUCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 4055 from Patent EP2074227 NA coding protein psRNATarget
BT017671.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:870   GGUCUUGUUCGUUUGUGCCGGAUU   893

1.5 Zea mays clone EL01N0442B02.c mRNA sequence NA coding protein psRNATarget
XM_020549216.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:139   GGUCUUGUUCGUUUGUGCCGGAUU   162

1.5 PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA NA coding protein psRNATarget
XM_020550140.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:3430   GGUCUUGUUCGUUUGUGCCGGAUU   3453

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008675573.2
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||||||||||||||||=|||||||
targets:3430   GGUCUUGUUCGUUUGUGCCGGAUU   3453

1.5 PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA NA coding protein psRNATarget
HI405936.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4061 from Patent EP2074227 NA coding protein psRNATarget
JB166406.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4070 from Patent EP2559767 NA coding protein psRNATarget
HI405939.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4064 from Patent EP2074227 NA coding protein psRNATarget
HI405940.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4065 from Patent EP2074227 NA coding protein psRNATarget
JB166397.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4061 from Patent EP2559767 NA coding protein psRNATarget
LQ238075.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4070 from Patent EP2985353 NA coding protein psRNATarget
LQ238069.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4064 from Patent EP2985353 NA coding protein psRNATarget
LQ238070.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4065 from Patent EP2985353 NA coding protein psRNATarget
JB166401.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4065 from Patent EP2559767 NA coding protein psRNATarget
LQ238066.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4061 from Patent EP2985353 NA coding protein psRNATarget
HI405945.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4070 from Patent EP2074227 NA coding protein psRNATarget
JB166400.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4064 from Patent EP2559767 NA coding protein psRNATarget
HI405933.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:11   GGCCUUGUUCGUUUGUGCCGGAUU   34

1.5 Sequence 4058 from Patent EP2074227 NA coding protein psRNATarget
LQ238062.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:11   GGGCUUGUUCGUUUGUGCCGGAUU   34

1.5 Sequence 4057 from Patent EP2985353 NA coding protein psRNATarget
HI405932.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:11   GGGCUUGUUCGUUUGUGCCGGAUU   34

1.5 Sequence 4057 from Patent EP2074227 NA coding protein psRNATarget
JB166393.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:11   GGGCUUGUUCGUUUGUGCCGGAUU   34

1.5 Sequence 4057 from Patent EP2559767 NA coding protein psRNATarget
LQ238063.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:11   GGCCUUGUUCGUUUGUGCCGGAUU   34

1.5 Sequence 4058 from Patent EP2985353 NA coding protein psRNATarget
JB166394.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:11   GGCCUUGUUCGUUUGUGCCGGAUU   34

1.5 Sequence 4058 from Patent EP2559767 NA coding protein psRNATarget
LQ239368.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:12   GGGCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 5363 from Patent EP2985353 NA coding protein psRNATarget
HI405804.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:12   GGCCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 3929 from Patent EP2074227 NA coding protein psRNATarget
JB167699.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:12   GGGCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 5363 from Patent EP2559767 NA coding protein psRNATarget
JB166265.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:12   GGCCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 3929 from Patent EP2559767 NA coding protein psRNATarget
HI407238.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:12   GGGCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 5363 from Patent EP2074227 NA coding protein psRNATarget
LQ237934.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:12   GGCCUUGUUCGUUUGUGCCGGAUU   35

1.5 Sequence 3929 from Patent EP2985353 NA coding protein psRNATarget
HI405948.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4073 from Patent EP2074227 NA coding protein psRNATarget
LQ238078.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4073 from Patent EP2985353 NA coding protein psRNATarget
JB166409.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:8   GGCCUUGUUCGUUUGUGCCGGAUU   31

1.5 Sequence 4073 from Patent EP2559767 NA coding protein psRNATarget
EU942882.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:72   GGCCUUGUUCGUUUGUGCCGGAUU   95

1.5 Zea mays clone 1543225 mRNA sequence NA coding protein psRNATarget
EZ109082.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:15   GGCCUUGUUCGUUUGUGCCGGAUU   38

1.5 TSA: Zea mays contig44741, mRNA sequence NA coding protein psRNATarget
BT017425.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*||||||||||||||=||||||
targets:758   GGCCUUGUUCGUUUGUAUCGGAUU   781

1.5 Zea mays clone EL01N0402H01.c mRNA sequence NA coding protein psRNATarget
EU953779.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:621   GGCCUUGUUCGUUUGUGCCGGAUU   644

1.5 Zea mays clone 1445891 mRNA sequence NA coding protein psRNATarget
BT063869.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*||||||||||||||=||||||
targets:823   GGCCUUGUUCGUUUGUAUCGGAUU   846

1.5 Zea mays full-length cDNA clone ZM_BFc0114G15 mRNA, complete cds NA coding protein psRNATarget
AY107168.2
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:858   GGCCUUGUUCGUUUGUGCCGGAUU   881

1.5 Zea mays PCO087750 mRNA sequence NA coding protein psRNATarget
BT035415.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:1419   GGCCUUGUUCGUUUGUGCCGGAUU   1442

1.5 Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds NA coding protein psRNATarget
NM_001138362.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:1419   GGCCUUGUUCGUUUGUGCCGGAUU   1442

1.5 Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA NA coding protein psRNATarget
NM_001175834.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*||||||||||||||=||||||
targets:853   GGCCUUGUUCGUUUGUAUCGGAUU   876

1.5 Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA NA coding protein psRNATarget
BT066445.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*||||||||||||||=||||||
targets:853   GGCCUUGUUCGUUUGUAUCGGAUU   876

1.5 Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds NA coding protein psRNATarget
XM_020538690.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||||=|||||||
targets:4119   GGCCUUGUUCGUUUGUGCCGGAUU   4142

1.5 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103627710), mRNA NA coding protein psRNATarget
EZ061700.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*=||||||||||||=|||||||
targets:89   GGCUUUGUUCGUUUGUGCCGGAUU   112

1.5 TSA: Zea mays contig62822, mRNA sequence NA coding protein psRNATarget
XM_020543230.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||*|||||||||
targets:626   GGCCUUGUUCGUUUCUACCGGAUU   649

1.5 PREDICTED: Zea mays putative cysteine-rich receptor-like protein kinase 39 (LOC103636418), mRNA NA coding protein psRNATarget
XM_020542682.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||*|||||||||
targets:715   GGCCUUGUUCGUUUCUACCGGAUU   738

1.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548712.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||=|||||||
targets:2056   GACCUUGUUCGUUUGUGCCGGAUU   2079

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020542681.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  ||*|||||||||||*|||||||||
targets:810   GGCCUUGUUCGUUUCUACCGGAUU   833

1.5 PREDICTED: Zea mays uncharacterized LOC109939377 (LOC109939377), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008672661.2
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||=|||||||
targets:2138   GACCUUGUUCGUUUGUGCCGGAUU   2161

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020548713.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||=|||||||
targets:2151   GACCUUGUUCGUUUGUGCCGGAUU   2174

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008672662.2
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||=|||||||
targets:2180   GACCUUGUUCGUUUGUGCCGGAUU   2203

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008672660.2
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||=|||||||
targets:2212   GACCUUGUUCGUUUGUGCCGGAUU   2235

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020548714.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||=|||||||
targets:2261   GACCUUGUUCGUUUGUGCCGGAUU   2284

1.5 PREDICTED: Zea mays laccase-15 (LOC103648173), transcript variant X5, mRNA NA coding protein psRNATarget
LQ238219.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||*|||||||||
targets:12   GACCUUGUUCGUUUCUACCGGAUU   35

1.5 Sequence 4214 from Patent EP2985353 NA coding protein psRNATarget
JB166550.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||*|||||||||
targets:12   GACCUUGUUCGUUUCUACCGGAUU   35

1.5 Sequence 4214 from Patent EP2559767 NA coding protein psRNATarget
HI406089.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||*|||||||||
targets:12   GACCUUGUUCGUUUCUACCGGAUU   35

1.5 Sequence 4214 from Patent EP2074227 NA coding protein psRNATarget
XM_020544148.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||||||*|||
targets:1155   GCCCUUGUUCGUUUGUACCGAAUU   1178

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020544147.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||||||*|||
targets:1155   GCCCUUGUUCGUUUGUACCGAAUU   1178

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020544149.1
ncRNA:24   CCAGAACAAGCAAACAUGGCCUAA   1
  |**|||||||||||||||||*|||
targets:1155   GCCCUUGUUCGUUUGUACCGAAUU   1178

1.5 PREDICTED: Zea mays probable WRKY transcription factor 62 (LOC109942268), transcript variant X5, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.