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BaseInfo

ncRNA ID novel_zma_miR8810
Species Zea mays
Class miRNA
Genome position Chr1:242701632-242701817 [-]
Reference genome RefGen_v4
Source SRR4237221;SRR4237222;SRR4237224
Length 24
Mature sequence(if miRNA) 163 - AUUGAAUGAUCAACUAGAGACGUU - 186
Stem-loop(if miRNA) --AUU      U                           A                                   AUAUA    CUUA  A   A
     GAAUGA CAACUAGAGACGUUAGAUCUAAAAUGA UGGUGAUGAUUUAAUAUGUGCACCAUGUGCACCAG     UUCU    UG CAU U
     |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     ||||    || ||| C
     UUUAUU GUUGAUCUCUGCAAUCUAGAUUUUACU ACCACUACUAAAUUAUACAUGUGGUACACGUGGUU     AAGG    AC GUA U
AAAUG      U                           C                                   ---GG    -UAC  -   G
Stem-loop sequence AUUGAAUGAUCAACUAGAGACGUUAGAUCUAAAAUGAAUGGUGAUGAUUUAAUAUGUGCACCAUGUGCACCAGAUAUAUUCUCUUAUGACAUAUCUGAUGCACAUGGAAGGUUGGUGCACAUGGUGUACAUAUUAAAUCAUCACCACUCAUUUUAGAUCUAACGUCUCUAGUUGUUUAUUUGUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008679080.2
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  |||||||=||||||||||||||||
targets:2042   AACGUCUUUAGUUGAUCAUUCAAU   2065

1.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008679083.2
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  |||||||=||||||||||||||||
targets:2033   AACGUCUUUAGUUGAUCAUUCAAU   2056

1.0 PREDICTED: Zea mays prolyl carboxypeptidase like protein (LOC100283354), transcript variant X2, mRNA NA coding protein psRNATarget
BT018927.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  |||||||=||||||||||||||||
targets:1065   AACGUCUUUAGUUGAUCAUUCAAU   1088

1.0 Zea mays clone Contig55.F mRNA sequence NA coding protein psRNATarget
BT087938.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  |||||||=||||||||||||||||
targets:885   AACGUCUUUAGUUGAUCAUUCAAU   908

1.0 Zea mays full-length cDNA clone ZM_BFb0319L01 mRNA, complete cds NA coding protein psRNATarget
BT037068.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  |||||||=||||||||||||||||
targets:920   AACGUCUUUAGUUGAUCAUUCAAU   943

1.0 Zea mays full-length cDNA clone ZM_BFb0153K19 mRNA, complete cds NA coding protein psRNATarget
LQ235514.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  ||=|||||||||||||=|||||||
targets:31   AAUGUCUCUAGUUGAUUAUUCAAU   54

1.5 Sequence 1509 from Patent EP2985353 NA coding protein psRNATarget
JB163845.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  ||=|||||||||||||=|||||||
targets:31   AAUGUCUCUAGUUGAUUAUUCAAU   54

1.5 Sequence 1509 from Patent EP2559767 NA coding protein psRNATarget
HI403384.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  ||=|||||||||||||=|||||||
targets:31   AAUGUCUCUAGUUGAUUAUUCAAU   54

1.5 Sequence 1509 from Patent EP2074227 NA coding protein psRNATarget
BT061436.2
ncRNA:24   UUGCAGAGAUCAACUAGUAA-GUUA   1
  ||||||||||||||||||||-||||
targets:191   AACGUCUCUAGUUGAUCAUUGCAAU   215

3.0 Zea mays full-length cDNA clone ZM_BFb0145O04 mRNA, complete cds NA coding protein psRNATarget
JB166451.1
ncRNA:24   UUGCAGAGAUCAACUAGUAA-GUUA   1
  ||||||||||||||||||||-||||
targets:49   AACGUCUCUAGUUGAUCAUUGCAAU   73

3.0 Sequence 4115 from Patent EP2559767 NA coding protein psRNATarget
HI405990.1
ncRNA:24   UUGCAGAGAUCAACUAGUAA-GUUA   1
  ||||||||||||||||||||-||||
targets:49   AACGUCUCUAGUUGAUCAUUGCAAU   73

3.0 Sequence 4115 from Patent EP2074227 NA coding protein psRNATarget
LQ238120.1
ncRNA:24   UUGCAGAGAUCAACUAGUAA-GUUA   1
  ||||||||||||||||||||-||||
targets:49   AACGUCUCUAGUUGAUCAUUGCAAU   73

3.0 Sequence 4115 from Patent EP2985353 NA coding protein psRNATarget
XM_008646350.2
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  |||||*||||||||||||||||||
targets:1626   AACGUAUCUAGUUGAUCAUUCAAU   1649

1.0 PREDICTED: Zea mays S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (LOC103625944), mRNA NA coding protein psRNATarget
JB163844.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  ||||||||||*|||||||||||||
targets:31   AACGUCUCUAAUUGAUCAUUCAAU   54

1.0 Sequence 1508 from Patent EP2559767 NA coding protein psRNATarget
LQ235513.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  ||||||||||*|||||||||||||
targets:31   AACGUCUCUAAUUGAUCAUUCAAU   54

1.0 Sequence 1508 from Patent EP2985353 NA coding protein psRNATarget
HI403383.1
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  ||||||||||*|||||||||||||
targets:31   AACGUCUCUAAUUGAUCAUUCAAU   54

1.0 Sequence 1508 from Patent EP2074227 NA coding protein psRNATarget
XM_008654898.2
ncRNA:24   UUGCAGAGAUCAACUAGUAAGUUA   1
  |||*||||||||||||=|||||||
targets:20   AACAUCUCUAGUUGAUUAUUCAAU   43

1.5 PREDICTED: Zea mays anthocyanidin 3-O-glucosyltransferase 2 (LOC103633204), mRNA NA coding protein psRNATarget
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