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BaseInfo

ncRNA ID novel_zma_miR8807
Species Zea mays
Class miRNA
Genome position Chr1:270509328-270509437 [-]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 87 - AGUAAUUUGACACAGCUCGCGAGC - 110
Stem-loop(if miRNA) --     -     CACA           C    A    A    -UUUA         
  AGUAA UUUGA    GCUCGCGAGCC GAGC AGCC ACUU     GGCUCGUUGC
  ||||| |||||    ||||||||||| |||| |||| ||||     |||||||||C
  UUAUU GAGCU    CGAGCGCUCGG CUUG UCGG UGAG     CCGAGCGAUG
UU     C     ---C           C    C    C    CCGAG         
Stem-loop sequence AGUAAUUUGACACAGCUCGCGAGCCCGAGCAAGCCAACUUUUUAGGCUCGUUGCCGUAGCGAGCCGAGCCGAGUCGGCUCGUUCCGGCUCGCGAGCCUCGAGCUUAUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT065735.1
ncRNA:24   CGAGCGCUCGACACAGUUUAAUGA   1
  |||||=||||||||||||||||||
targets:1642   GCUCGUGAGCUGUGUCAAAUUACU   1665

1.0 Zea mays full-length cDNA clone ZM_BFc0052C16 mRNA, complete cds NA coding protein psRNATarget
EU951769.1
ncRNA:24   CGAGCGCUCGACACAGUUUAAUGA   1
  |=||||||||||||*|||||||||
targets:461   GUUCGCGAGCUGUGCCAAAUUACU   484

1.5 Zea mays clone 998646 mRNA sequence NA coding protein psRNATarget