Search result

BaseInfo

ncRNA ID	novel_zma_miR8805
Species	Zea mays
Class	miRNA
Genome position	Chr1:278448146-278448253 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - AUGGAUUGAGGUGAAUACGAGAGU - 24
Stem-loop(if miRNA)	--       C                         UAAAUU   A     C      UCUCGUA UCACCUCAAUCCAUGUGUAUUGAGG      AGA UGUAA UUAA   ||||||| |||||||||||||||||||||||||      ||| ||||| |||A   AGAGCAU AGUGGAGUUAGGUAUACAUAACUUC      UCU ACAUU AAUC UG       A                         CCUCAC   -     U
Stem-loop sequence	UCUCGUACUCACCUCAAUCCAUGUGUAUUGAGGUAAAUUAGAAUGUAACUUAAACUAAUUUACAUCUCACUCCCUUCAAUACAUAUGGAUUGAGGUGAAUACGAGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942746.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |||||=|||||||||||||||||| targets:336   ACUCUUGUAUUCACCUCAAUCCAU   359 Target Full Sequence	1.0	Zea mays clone 1533321 mRNA sequence	NA	coding protein	psRNATarget
JB163494.1	ncRNA:22   AGAGCAUAAGUGGAGUUAGGUA   1   ||||||||||||||=||||||| targets:1   UCUCGUAUUCACCUUAAUCCAU   22 Target Full Sequence	1.5	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:22   AGAGCAUAAGUGGAGUUAGGUA   1   ||||||||||||||=||||||| targets:1   UCUCGUAUUCACCUUAAUCCAU   22 Target Full Sequence	1.5	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
HI403033.1	ncRNA:22   AGAGCAUAAGUGGAGUUAGGUA   1   ||||||||||||||=||||||| targets:1   UCUCGUAUUCACCUUAAUCCAU   22 Target Full Sequence	1.5	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020539168.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |||||*|||||||||||||||||* targets:1318   ACUCUAGUAUUCACCUCAAUCCAC   1341 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC107275233 (LOC107275233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU950672.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |||||*|||||||||||||||||* targets:1021   ACUCUAGUAUUCACCUCAAUCCAC   1044 Target Full Sequence	2.0	Zea mays clone 508256 mRNA sequence	NA	coding protein	psRNATarget
XM_020540490.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:1023   AUUAUCGUAUUCAUCUCAAUCCAU   1046 Target Full Sequence	1.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540489.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:973   AUUAUCGUAUUCAUCUCAAUCCAU   996 Target Full Sequence	1.5	PREDICTED: Zea mays RNA polymerase II Rpb4 core protein (umc1549a), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT065432.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:942   AUUAUCGUAUUCAUCUCAAUCCAU   965 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0153M09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153718.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:942   AUUAUCGUAUUCAUCUCAAUCCAU   965 Target Full Sequence	1.5	Zea mays RNA polymerase II Rpb4 core protein (umc1549a), mRNA	NA	coding protein	psRNATarget
EU953864.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:932   AUUAUCGUAUUCAUCUCAAUCCAU   955 Target Full Sequence	1.5	Zea mays clone 1447962 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
EU959927.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:957   AUUAUCGUAUUCAUCUCAAUCCAU   980 Target Full Sequence	1.5	Zea mays clone 220699 calcitonin peptide-receptor component protein mRNA, complete cds	NA	coding protein	psRNATarget
AY109209.2	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:919   AUUAUCGUAUUCAUCUCAAUCCAU   942 Target Full Sequence	1.5	Zea mays PCO083694 mRNA sequence	NA	coding protein	psRNATarget
XM_020548227.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:729   AUUAUCGUAUUCAUCUCAAUCCAU   752 Target Full Sequence	1.5	PREDICTED: Zea mays DNA-directed RNA polymerase III subunit RPC9-like (LOC109943977), mRNA	NA	coding protein	psRNATarget
XM_020548228.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:678   AUUAUCGUAUUCAUCUCAAUCCAU   701 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109943978 (LOC109943978), mRNA	NA	coding protein	psRNATarget
XM_020548226.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:651   AUUAUCGUAUUCAUCUCAAUCCAU   674 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC109939175 (LOC109939175), mRNA	NA	coding protein	psRNATarget
EZ089181.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |=|*|||||||||=|||||||||| targets:337   AUUAUCGUAUUCAUCUCAAUCCAU   360 Target Full Sequence	1.5	TSA: Zea mays contig24827, mRNA sequence	NA	coding protein	psRNATarget
XM_008646892.2	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |||||*|||||*|||||||||||| targets:3305   ACUCUAGUAUUGACCUCAAUCCAU   3328 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646891.2	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |||||*|||||*|||||||||||| targets:3210   ACUCUAGUAUUGACCUCAAUCCAU   3233 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646893.2	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |||||*|||||*|||||||||||| targets:3124   ACUCUAGUAUUGACCUCAAUCCAU   3147 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103626481 (LOC103626481), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU974368.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   =||=||||=||||*|||||||||| targets:1159   GCUUUCGUGUUCAGCUCAAUCCAU   1182 Target Full Sequence	2.5	Zea mays clone 447232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
HI403138.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   ||||||||||||||||||||* targets:1   CUCGUAUUCACCUCAAUCCAC   21 Target Full Sequence	1.0	Sequence 1263 from Patent EP2074227	NA	coding protein	psRNATarget
JB163599.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   ||||||||||||||||||||* targets:1   CUCGUAUUCACCUCAAUCCAC   21 Target Full Sequence	1.0	Sequence 1263 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235268.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   ||||||||||||||||||||* targets:1   CUCGUAUUCACCUCAAUCCAC   21 Target Full Sequence	1.0	Sequence 1263 from Patent EP2985353	NA	coding protein	psRNATarget
BT069317.2	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   |||-|*||||||||=||||||||| targets:81   ACU-UAGUAUUCACUUCAAUCCAU   103 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0072E01 mRNA, complete cds	NA	coding protein	psRNATarget
LQ235208.1	ncRNA:22   AGAGCAUAAGUGGAGUUAGGUA   1   ||*=||||||||||=||||||| targets:1   UCCUGUAUUCACCUUAAUCCAU   22 Target Full Sequence	2.5	Sequence 1203 from Patent EP2985353	NA	coding protein	psRNATarget
HI403078.1	ncRNA:22   AGAGCAUAAGUGGAGUUAGGUA   1   ||*=||||||||||=||||||| targets:1   UCCUGUAUUCACCUUAAUCCAU   22 Target Full Sequence	2.5	Sequence 1203 from Patent EP2074227	NA	coding protein	psRNATarget
JB163539.1	ncRNA:22   AGAGCAUAAGUGGAGUUAGGUA   1   ||*=||||||||||=||||||| targets:1   UCCUGUAUUCACCUUAAUCCAU   22 Target Full Sequence	2.5	Sequence 1203 from Patent EP2559767	NA	coding protein	psRNATarget
BT018765.1	ncRNA:24   UGAG--AGCAUAAGUGGAGUUAGGUA   1   =||=--||||=||||*|||||||||| targets:1162   GCUUGUUCGUGUUCAGCUCAAUCCAU   1187 Target Full Sequence	2.5	Zea mays clone EL01N0524E08.d mRNA sequence	NA	coding protein	psRNATarget
BT042079.1	ncRNA:24   UGAG--AGCAUAAGUGGAGUUAGGUA   1   =||=--||||=||||*|||||||||| targets:1141   GCUUGUUCGUGUUCAGCUCAAUCCAU   1166 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0126H24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148335.1	ncRNA:24   UGAG--AGCAUAAGUGGAGUUAGGUA   1   =||=--||||=||||*|||||||||| targets:1141   GCUUGUUCGUGUUCAGCUCAAUCCAU   1166 Target Full Sequence	2.5	Zea mays Methyltransferase family protein (LOC100273944), mRNA	NA	coding protein	psRNATarget
EU967897.1	ncRNA:24   UGAG--AGCAUAAGUGGAGUUAGGUA   1   =||=--||||=||||*|||||||||| targets:1180   GCUUGUUCGUGUUCAGCUCAAUCCAU   1205 Target Full Sequence	2.5	Zea mays clone 306881 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU961221.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   **|||*|||||||||||||||*|| targets:991   UGUCUAGUAUUCACCUCAAUCAAU   1014 Target Full Sequence	2.5	Zea mays clone 233606 ras-related protein ARA-3 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155425.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   **|||*|||||||||||||||*|| targets:991   UGUCUAGUAUUCACCUCAAUCAAU   1014 Target Full Sequence	2.5	Zea mays uncharacterized LOC100282517 (pco128668), mRNA	NA	coding protein	psRNATarget
XM_008669748.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   **|||*|||||||||||||||*|| targets:994   UGUCUAGUAUUCACCUCAAUCAAU   1017 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100282517 (pco128668), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT069613.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   **|||*|||||||||||||||*|| targets:1043   UGUCUAGUAUUCACCUCAAUCAAU   1066 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0181A19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669749.2	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   **|||*|||||||||||||||*|| targets:932   UGUCUAGUAUUCACCUCAAUCAAU   955 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100282517 (pco128668), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT035355.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   **|||*|||||||||||||||*|| targets:932   UGUCUAGUAUUCACCUCAAUCAAU   955 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0057D23 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669750.2	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   **|||*|||||||||||||||*|| targets:701   UGUCUAGUAUUCACCUCAAUCAAU   724 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100282517 (pco128668), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163470.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   |||*||||||||||||||||* targets:1   CUCAUAUUCACCUCAAUCCAC   21 Target Full Sequence	2.0	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   |||*||||||||||||||||* targets:1   CUCAUAUUCACCUCAAUCCAC   21 Target Full Sequence	2.0	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
HI403009.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   |||*||||||||||||||||* targets:1   CUCAUAUUCACCUCAAUCCAC   21 Target Full Sequence	2.0	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   ||*|||||||||||||||||* targets:1   CUAGUAUUCACCUCAAUCCAC   21 Target Full Sequence	2.0	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
HI402996.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   ||*|||||||||||||||||* targets:1   CUAGUAUUCACCUCAAUCCAC   21 Target Full Sequence	2.0	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
JB163457.1	ncRNA:21   GAGCAUAAGUGGAGUUAGGUA   1   ||*|||||||||||||||||* targets:1   CUAGUAUUCACCUCAAUCCAC   21 Target Full Sequence	2.0	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001149644.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   ***|**|||||||||||||||||| targets:1767   UGACGAGUAUUCACCUCAAUCCAU   1790 Target Full Sequence	1.0	Zea mays RNA methyltransferase family protein (cl27616_1), mRNA	NA	coding protein	psRNATarget
BT067709.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   ***|**|||||||||||||||||| targets:1767   UGACGAGUAUUCACCUCAAUCCAU   1790 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0125K08 mRNA, complete cds	NA	coding protein	psRNATarget
EU957013.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   ***|**|||||||||||||||||| targets:1781   UGACGAGUAUUCACCUCAAUCCAU   1804 Target Full Sequence	1.0	Zea mays clone 1580497 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT042729.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   ***|**|||||||||||||||||| targets:1697   UGACGAGUAUUCACCUCAAUCCAU   1720 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0030P17 mRNA, complete cds	NA	coding protein	psRNATarget
EU955601.1	ncRNA:24   UGAGAGCAUAAGUGGAGUUAGGUA   1   =|*|*=||||*||||||||||||| targets:467   GCACAUGUAUCCACCUCAAUCCAU   490 Target Full Sequence	2.0	Zea mays clone 1539227 mRNA sequence	NA	coding protein	psRNATarget