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BaseInfo

ncRNA ID	novel_zma_miR8802
Species	Zea mays
Class	miRNA
Genome position	Chr1:297878108-297878197 [-]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237222
Length	24
Mature sequence(if miRNA)	1 - AUUCGAGAACGGAGGUAGUACUAU - 24
Stem-loop(if miRNA)	--      C           UUU     A  A G          A   AGUACU CCUCCGUUCUU   UAUUU UC C UUUUAGUUCA A   |||||| |||||||||||   ||||| || | ||||||||||   UCAUGA GGAGGCAAGAG   AUAAA AG G AGGAUCAAGU A UA      U           CUU     C  C G          A
Stem-loop sequence	AGUACUCCCUCCGUUCUUUUUUAUUUAUCACGUUUUAGUUCAAAAAUGAACUAGGAGGCGACAAAUAUUCGAGAACGGAGGUAGUACUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT042256.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ||||||||||*||||||||||||| targets:841   AUAGUACUACAUCCGUUCUCGAAU   864 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds	NA	coding protein	psRNATarget
EU946581.1	ncRNA:24   UAU-CAUGAUGGAGGCAAGAGCUUA   1   |||-||||||||||||||||=|||| targets:183   AUAUGUACUACCUCCGUUCUUGAAU   207 Target Full Sequence	1.5	Zea mays clone 317675 mRNA sequence	NA	coding protein	psRNATarget
XM_008658418.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   **|||||||||||||||||||||| targets:4918   CAAGUACUACCUCCGUUCUCGAAU   4941 Target Full Sequence	0.0	PREDICTED: Zea mays ABC transporter G family member 36 (LOC103636060), mRNA	NA	coding protein	psRNATarget
LQ242043.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:178   AUGUUGUACUACCUCCGUUCUCGAAU   203 Target Full Sequence	0.0	Sequence 8038 from Patent EP2985353	NA	coding protein	psRNATarget
HI409913.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:178   AUGUUGUACUACCUCCGUUCUCGAAU   203 Target Full Sequence	0.0	Sequence 8038 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242205.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:178   AUGUUGUACUACCUCCGUUCUCGAAU   203 Target Full Sequence	0.0	Sequence 8200 from Patent EP2985353	NA	coding protein	psRNATarget
JB170536.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:178   AUGUUGUACUACCUCCGUUCUCGAAU   203 Target Full Sequence	0.0	Sequence 8200 from Patent EP2559767	NA	coding protein	psRNATarget
JB170374.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:178   AUGUUGUACUACCUCCGUUCUCGAAU   203 Target Full Sequence	0.0	Sequence 8038 from Patent EP2559767	NA	coding protein	psRNATarget
HI410075.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:178   AUGUUGUACUACCUCCGUUCUCGAAU   203 Target Full Sequence	0.0	Sequence 8200 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020537813.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:859   AUGUUGUACUACCUCCGUUCUCGAAU   884 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020537812.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:913   AUGUUGUACUACCUCCGUUCUCGAAU   938 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020537811.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:965   AUGUUGUACUACCUCCGUUCUCGAAU   990 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU962019.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:1013   AUGUUGUACUACCUCCGUUCUCGAAU   1038 Target Full Sequence	0.0	Zea mays clone 239644 mRNA sequence	NA	coding protein	psRNATarget
XM_020537810.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||||||||||||||||| targets:1018   AUGUUGUACUACCUCCGUUCUCGAAU   1043 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ082762.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ||-||||||||||||||||||||| targets:3   AU-GUACUACCUCCGUUCUCGAAU   25 Target Full Sequence	0.0	TSA: Zea mays contig18405, mRNA sequence	NA	coding protein	psRNATarget
EU945472.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ||-||||||||||||||||||||| targets:426   AU-GUACUACCUCCGUUCUCGAAU   448 Target Full Sequence	0.0	Zea mays clone 274397 mRNA sequence	NA	coding protein	psRNATarget
EU960779.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ||-||||||||||||||||||||| targets:1303   AU-GUACUACCUCCGUUCUCGAAU   1325 Target Full Sequence	0.0	Zea mays clone 228509 mRNA sequence	NA	coding protein	psRNATarget
BT017193.1	ncRNA:24   UAUC----AUGAUGGAGGCAAGAGCUUA   1   =|||----|||||||||||||||||||| targets:944   GUAGCUUGUACUACCUCCGUUCUCGAAU   971 Target Full Sequence	0.0	Zea mays clone EL01N0371C09.c mRNA sequence	NA	coding protein	psRNATarget
EU965353.1	ncRNA:24   UAUC----AUGAUGGAGGCAAGAGCUUA   1   =|||----|||||||||||||||||||| targets:1012   GUAGCUUGUACUACCUCCGUUCUCGAAU   1039 Target Full Sequence	0.0	Zea mays clone 285514 CAPIP1 mRNA, complete cds	NA	coding protein	psRNATarget
BT040068.1	ncRNA:24   UAUC----AUGAUGGAGGCAAGAGCUUA   1   =|||----|||||||||||||||||||| targets:907   GUAGCUUGUACUACCUCCGUUCUCGAAU   934 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0063E17 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147497.1	ncRNA:24   UAUC----AUGAUGGAGGCAAGAGCUUA   1   =|||----|||||||||||||||||||| targets:907   GUAGCUUGUACUACCUCCGUUCUCGAAU   934 Target Full Sequence	0.0	Zea mays CAPIP1 (LOC100273048), mRNA	NA	coding protein	psRNATarget
EZ110367.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *|*||||||||||||||||||||| targets:417   UUUGUACUACCUCCGUUCUCGAAU   440 Target Full Sequence	0.0	TSA: Zea mays contig46027, mRNA sequence	NA	coding protein	psRNATarget
EU950930.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||||||*|||||||||||||||| targets:337   UUAGUACAACCUCCGUUCUCGAAU   360 Target Full Sequence	1.0	Zea mays clone 660705 mRNA sequence	NA	coding protein	psRNATarget
NM_001175535.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||||||*|||||||||||||||| targets:1536   UUAGUACAACCUCCGUUCUCGAAU   1559 Target Full Sequence	1.0	Zea mays uncharacterized LOC100382838 (LOC100382838), mRNA	NA	coding protein	psRNATarget
BT065511.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||||||*|||||||||||||||| targets:1536   UUAGUACAACCUCCGUUCUCGAAU   1559 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0202I04 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540634.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||||||*|||||||||||||||| targets:1639   UUAGUACAACCUCCGUUCUCGAAU   1662 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382838 (LOC100382838), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ071175.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-|||||||||||||||=|||| targets:90   AUA-UACUACCUCCGUUCUUGAAU   112 Target Full Sequence	1.5	TSA: Zea mays contig06812, mRNA sequence	NA	coding protein	psRNATarget
EZ053711.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||||=||||||||||| targets:96   AUA-UACUACCUUCGUUCUCGAAU   118 Target Full Sequence	1.5	TSA: Zea mays contig54833, mRNA sequence	NA	coding protein	psRNATarget
EU940900.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||||=||||||||||| targets:1232   AUA-UACUACCUUCGUUCUCGAAU   1254 Target Full Sequence	1.5	Zea mays clone 1168188 mRNA sequence	NA	coding protein	psRNATarget
XM_008665300.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||||=||||||||||| targets:2066   AUA-UACUACCUUCGUUCUCGAAU   2088 Target Full Sequence	1.5	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008665299.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||||=||||||||||| targets:2078   AUA-UACUACCUUCGUUCUCGAAU   2100 Target Full Sequence	1.5	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008665301.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||||=||||||||||| targets:2131   AUA-UACUACCUUCGUUCUCGAAU   2153 Target Full Sequence	1.5	PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545884.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||=||||||||||||| targets:3505   AUA-UACUACUUCCGUUCUCGAAU   3527 Target Full Sequence	1.0	PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA	NA	coding protein	psRNATarget
AY111450.1	ncRNA:24   UAU----CAUGAUGGAGGCAAGAGCUUA   1   ||=----||||||||||=|||||||||| targets:275   AUGUUUUGUACUACCUCUGUUCUCGAAU   302 Target Full Sequence	1.5	Zea mays CL68522_1 mRNA sequence	NA	coding protein	psRNATarget
EU940941.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   **||||||=|||=||||||||||| targets:1723   UAAGUACUGCCUUCGUUCUCGAAU   1746 Target Full Sequence	2.5	Zea mays clone 1218400 mRNA sequence	NA	coding protein	psRNATarget
EU954561.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   **||||||=|||=||||||||||| targets:2150   UAAGUACUGCCUUCGUUCUCGAAU   2173 Target Full Sequence	2.5	Zea mays clone 1470172 regulatory subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153830.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   **||||||=|||=||||||||||| targets:2150   UAAGUACUGCCUUCGUUCUCGAAU   2173 Target Full Sequence	2.5	Zea mays regulatory subunit (LOC100280910), mRNA	NA	coding protein	psRNATarget
XM_008645362.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   **||||||=|||=||||||||||| targets:2221   UAAGUACUGCCUUCGUUCUCGAAU   2244 Target Full Sequence	2.5	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645361.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   **||||||=|||=||||||||||| targets:2239   UAAGUACUGCCUUCGUUCUCGAAU   2262 Target Full Sequence	2.5	PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657123.2	ncRNA:24   UAU----CAUGAUGGAGGCAAGAGCUUA   1   ||=----||||||||||=|||||||||| targets:2346   AUGUUUUGUACUACCUCUGUUCUCGAAU   2373 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384745 (LOC100384745), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008657122.2	ncRNA:24   UAU----CAUGAUGGAGGCAAGAGCUUA   1   ||=----||||||||||=|||||||||| targets:2369   AUGUUUUGUACUACCUCUGUUCUCGAAU   2396 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384745 (LOC100384745), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657121.2	ncRNA:24   UAU----CAUGAUGGAGGCAAGAGCUUA   1   ||=----||||||||||=|||||||||| targets:2442   AUGUUUUGUACUACCUCUGUUCUCGAAU   2469 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384745 (LOC100384745), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676081.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *|*|||=||||||||||||||||| targets:2484   UUUGUAUUACCUCCGUUCUCGAAU   2507 Target Full Sequence	1.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676082.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *|*|||=||||||||||||||||| targets:2488   UUUGUAUUACCUCCGUUCUCGAAU   2511 Target Full Sequence	1.0	PREDICTED: Zea mays WPP domain-associated protein (LOC103650495), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545142.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||-|||||||||||||||||||| targets:379   UUA-UACUACCUCCGUUCUCGAAU   401 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100382526 (LOC100382526), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT083888.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ***|||||||||=||||||||||| targets:1100   UGUGUACUACCUUCGUUCUCGAAU   1123 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001177150.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ***|||||||||=||||||||||| targets:1251   UGUGUACUACCUUCGUUCUCGAAU   1274 Target Full Sequence	1.5	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
BT042757.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ***|||||||||=||||||||||| targets:1268   UGUGUACUACCUUCGUUCUCGAAU   1291 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148677.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ***|||||||||=||||||||||| targets:1268   UGUGUACUACCUUCGUUCUCGAAU   1291 Target Full Sequence	1.5	Zea mays hypothetical protein (umc1687), mRNA	NA	coding protein	psRNATarget
XM_020546478.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||*|||||||*|||||||||||| targets:2914   AUAAUACUACCCCCGUUCUCGAAU   2937 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546479.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||*|||||||*|||||||||||| targets:2914   AUAAUACUACCCCCGUUCUCGAAU   2937 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100194233 (LOC100194233), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU950207.1	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=|||||||||||||| targets:24   AUGUGAGCUACUAUCUCCGUUCUCGAAU   51 Target Full Sequence	1.0	Zea mays clone 469419 mRNA sequence	NA	coding protein	psRNATarget
EZ050211.1	ncRNA:24   UAUCAUGAU-GGAGGCAAGAGCUUA   1   **=||||||-||||||||||||||| targets:29   CAGGUACUAACCUCCGUUCUCGAAU   53 Target Full Sequence	2.0	TSA: Zea mays contig51330, mRNA sequence	NA	coding protein	psRNATarget
EU975574.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *|**|||||||||||||||||||| targets:26   UUUCUACUACCUCCGUUCUCGAAU   49 Target Full Sequence	0.0	Zea mays clone 492870 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061281.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *|=*||||=||||||||||||||| targets:1367   UUGAUACUGCCUCCGUUCUCGAAU   1390 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0131A16 mRNA, complete cds	NA	coding protein	psRNATarget
EZ077311.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ||-||||||||*|||||||||||| targets:108   AU-GUACUACCCCCGUUCUCGAAU   130 Target Full Sequence	1.5	TSA: Zea mays contig12948, mRNA sequence	NA	coding protein	psRNATarget
NM_001151933.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||*||||||||||||| targets:90   AUA-UACUACAUCCGUUCUCGAAU   112 Target Full Sequence	1.0	Zea mays uncharacterized LOC100278762 (LOC100278762), mRNA	NA	coding protein	psRNATarget
EU975204.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||||*||||||||||||| targets:90   AUA-UACUACAUCCGUUCUCGAAU   112 Target Full Sequence	1.0	Zea mays clone 484326 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT060531.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   ||=*||||||||||||||||*||| targets:407   AUGAUACUACCUCCGUUCUCAAAU   430 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0012H17 mRNA, complete cds	NA	coding protein	psRNATarget
EZ084539.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||*||||||||||||||||*||| targets:13   UUAAUACUACCUCCGUUCUCAAAU   36 Target Full Sequence	1.5	TSA: Zea mays contig20183, mRNA sequence	NA	coding protein	psRNATarget
M73828.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |*|*||=||||||||||=|||||| targets:570   AAACUAUUACCUCCGUUUUCGAAU   593 Target Full Sequence	2.5	Maize ferredoxin (Fd) isoprotein mRNA, pFD5	NA	coding protein	psRNATarget
XM_008666912.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-||||=*|||||||||||||| targets:1754   AUA-UACUGACUCCGUUCUCGAAU   1776 Target Full Sequence	2.0	PREDICTED: Zea mays LOB domain-containing protein 36 (LOC103643737), mRNA	NA	coding protein	psRNATarget
XM_008660842.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   =||*|||||=||||||||||*||| targets:3014   GUAAUACUAUCUCCGUUCUCAAAU   3037 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103637791), mRNA	NA	coding protein	psRNATarget
EZ049723.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||*||||||*|=||||||||||| targets:43   UUAUUACUACAUUCGUUCUCGAAU   66 Target Full Sequence	2.5	TSA: Zea mays contig50841, mRNA sequence	NA	coding protein	psRNATarget
AY104299.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||-||||||||||||||||*||| targets:1264   UUA-UACUACCUCCGUUCUCAAAU   1286 Target Full Sequence	1.5	Zea mays PCO075569 mRNA sequence	NA	coding protein	psRNATarget
NM_001157753.1	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=||||||||||*||| targets:1509   AUGUGAGCUACUAUCUCCGUUCUCAAAU   1536 Target Full Sequence	2.5	Zea mays signal peptide peptidase-like 3 (LOC100284858), mRNA	NA	coding protein	psRNATarget
EU969922.1	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=||||||||||*||| targets:1509   AUGUGAGCUACUAUCUCCGUUCUCAAAU   1536 Target Full Sequence	2.5	Zea mays clone 337285 signal peptide peptidase-like 3 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680960.2	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=||||||||||*||| targets:1889   AUGUGAGCUACUAUCUCCGUUCUCAAAU   1916 Target Full Sequence	2.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008680966.2	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=||||||||||*||| targets:1877   AUGUGAGCUACUAUCUCCGUUCUCAAAU   1904 Target Full Sequence	2.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT086185.1	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=||||||||||*||| targets:1877   AUGUGAGCUACUAUCUCCGUUCUCAAAU   1904 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0127I09 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680954.1	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=||||||||||*||| targets:1888   AUGUGAGCUACUAUCUCCGUUCUCAAAU   1915 Target Full Sequence	2.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008680972.1	ncRNA:24   UA---UC-AUGAUGGAGGCAAGAGCUUA   1   ||---||-|||||=||||||||||*||| targets:1936   AUGUGAGCUACUAUCUCCGUUCUCAAAU   1963 Target Full Sequence	2.5	PREDICTED: Zea mays signal peptide peptidase-like 3 (LOC100284858), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EZ091721.1	ncRNA:24   UAU--CAUGAUGGAGGCAAGAGCUUA   1   ||=--||||||*||||*||||||||| targets:49   AUGAUGUACUAACUCCAUUCUCGAAU   74 Target Full Sequence	2.5	TSA: Zea mays contig27370, mRNA sequence	NA	coding protein	psRNATarget
EU952914.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||--||||=||=||||||||||| targets:973   UUA--ACUAUCUUCGUUCUCGAAU   994 Target Full Sequence	2.5	Zea mays clone 1357151 mRNA sequence	NA	coding protein	psRNATarget
NM_001352895.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   *||--||||=||=||||||||||| targets:1566   UUA--ACUAUCUUCGUUCUCGAAU   1587 Target Full Sequence	2.5	Zea mays homeobox-leucine zipper protein HOX23 (LOC103626227), mRNA	NA	coding protein	psRNATarget
XM_008675718.2	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   |||-|||||*|||||||*|||||| targets:1123   AUA-UACUAACUCCGUUAUCGAAU   1145 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103650050 (LOC103650050), mRNA	NA	coding protein	psRNATarget
EU941865.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   =*||*|||||*|=||||||||||| targets:253   GAAGCACUACAUUCGUUCUCGAAU   276 Target Full Sequence	2.5	Zea mays clone 1471446 mRNA sequence	NA	coding protein	psRNATarget
BT033724.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   =*|*||||||*|=||||||||||| targets:701   GAAAUACUACAUUCGUUCUCGAAU   724 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0117I19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137023.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   =*|*||||||*|=||||||||||| targets:701   GAAAUACUACAUUCGUUCUCGAAU   724 Target Full Sequence	2.5	Zea mays Hevein-like preproprotein (pco080661a), mRNA	NA	coding protein	psRNATarget
BT066730.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   =*||*|||||*|=||||||||||| targets:1968   GAAGCACUACAUUCGUUCUCGAAU   1991 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0060F08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ051484.1	ncRNA:24   UAUCAUGAUGGAGGCAAGAGCUUA   1   =*|*||||||*||||||||||||* targets:143   GAAAUACUACAUCCGUUCUCGAAA   166 Target Full Sequence	2.0	TSA: Zea mays contig52604, mRNA sequence	NA	coding protein	psRNATarget