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BaseInfo

ncRNA ID	novel_zma_miR8791
Species	Zea mays
Class	miRNA
Genome position	Chr9:5081514-5081597 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	61 - AAUCUCCCUCAAUCCCUAUGGUUU - 84
Stem-loop(if miRNA)	--U               AG    AAAUCCCCUACAAGUUAA    CCAUAGGGAUUGAGG  GAUU                  A    |||||||||||||||  ||||    GGUAUCCCUAACUCC  CUAA                  A UUU               CU    CCUUCCCUAACCUCUCCU
Stem-loop sequence	UCCAUAGGGAUUGAGGAGGAUUAAAUCCCCUACAAGUUAAAAUCCUCUCCAAUCCCUUCCAAUCUCCCUCAAUCCCUAUGGUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI409880.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:7   AAACCAUAGGGAUUGAGGGGGAUU   30 Target Full Sequence	1.5	Sequence 8005 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242010.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:7   AAACCAUAGGGAUUGAGGGGGAUU   30 Target Full Sequence	1.5	Sequence 8005 from Patent EP2985353	NA	coding protein	psRNATarget
JB170341.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:7   AAACCAUAGGGAUUGAGGGGGAUU   30 Target Full Sequence	1.5	Sequence 8005 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239468.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:13   AAACCAUAGGGAUUGAGGGGGAUU   36 Target Full Sequence	1.5	Sequence 5463 from Patent EP2985353	NA	coding protein	psRNATarget
HI407338.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:13   AAACCAUAGGGAUUGAGGGGGAUU   36 Target Full Sequence	1.5	Sequence 5463 from Patent EP2074227	NA	coding protein	psRNATarget
JB167799.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:13   AAACCAUAGGGAUUGAGGGGGAUU   36 Target Full Sequence	1.5	Sequence 5463 from Patent EP2559767	NA	coding protein	psRNATarget
EU959460.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:1182   AAACCAUAGGGAUUGAGGGGGAUU   1205 Target Full Sequence	1.5	Zea mays clone 218223 CTD small phosphatase-like protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154990.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:1182   AAACCAUAGGGAUUGAGGGGGAUU   1205 Target Full Sequence	1.5	Zea mays CTD small phosphatase-like protein (cl28155_-2), mRNA	NA	coding protein	psRNATarget
XM_020537815.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   |||||||||||||||||||=|||| targets:2543   AAACCAUAGGGAUUGAGGGGGAUU   2566 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized protein DDB_G0284459 (LOC103627942), mRNA	NA	coding protein	psRNATarget
XM_020546944.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*||||=|||||||||||=|||| targets:602   AAUCCAUGGGGAUUGAGGGGGAUU   625 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546943.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*||||=|||||||||||=|||| targets:659   AAUCCAUGGGGAUUGAGGGGGAUU   682 Target Full Sequence	2.5	PREDICTED: Zea mays cytochrome b5-like (LOC109943550), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406643.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||||||| targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51 Target Full Sequence	1.0	Sequence 4768 from Patent EP2074227	NA	coding protein	psRNATarget
JB167104.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||||||| targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51 Target Full Sequence	1.0	Sequence 4768 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238773.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||||||| targets:28   AAUCCAUAUGGAUUGAGGGAGAUU   51 Target Full Sequence	1.0	Sequence 4768 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||=|||| targets:375   AAUCCAUAUGGAUUGAGGGGGAUU   398 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
EU972046.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||=|||| targets:714   AAUCCAUAUGGAUUGAGGGGGAUU   737 Target Full Sequence	2.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020548080.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||=|||| targets:977   AAUCCAUAUGGAUUGAGGGGGAUU   1000 Target Full Sequence	2.5	PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA	NA	coding protein	psRNATarget
BT055467.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||=|||| targets:1015   AAUCCAUAUGGAUUGAGGGGGAUU   1038 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds	NA	coding protein	psRNATarget
EU956568.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||=|||| targets:1560   AAUCCAUAUGGAUUGAGGGGGAUU   1583 Target Full Sequence	2.5	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget
EU948289.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*==||||||||||||*|||||| targets:452   AAUUUAUAGGGAUUGAGCGAGAUU   475 Target Full Sequence	1.5	Zea mays clone 372404 mRNA sequence	NA	coding protein	psRNATarget
HI405896.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||*|||||| targets:12   AAUCCAUAUGGAUUGAGUGAGAUU   35 Target Full Sequence	2.5	Sequence 4021 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238026.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||*|||||| targets:12   AAUCCAUAUGGAUUGAGUGAGAUU   35 Target Full Sequence	2.5	Sequence 4021 from Patent EP2985353	NA	coding protein	psRNATarget
JB166357.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||*|||||| targets:12   AAUCCAUAUGGAUUGAGUGAGAUU   35 Target Full Sequence	2.5	Sequence 4021 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020550074.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||*|||||| targets:725   AAUCCAUAUGGAUUGAGUGAGAUU   748 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550075.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||*|||||| targets:733   AAUCCAUAUGGAUUGAGUGAGAUU   756 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC732794 (IDP506), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU961636.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||||||*|| targets:1059   AAUCCAUAUGGAUUGAGGGAGUUU   1082 Target Full Sequence	2.5	Zea mays clone 237217 mRNA sequence	NA	coding protein	psRNATarget
BT040208.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*|||||*||||||||*|||||| targets:1298   AAUCCAUAUGGAUUGAGUGAGAUU   1321 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds	NA	coding protein	psRNATarget
LQ242290.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:7   AAUUCAUAUGGAUUGAGUGAGAUU   30 Target Full Sequence	2.5	Sequence 8285 from Patent EP2985353	NA	coding protein	psRNATarget
JB170621.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:7   AAUUCAUAUGGAUUGAGUGAGAUU   30 Target Full Sequence	2.5	Sequence 8285 from Patent EP2559767	NA	coding protein	psRNATarget
HI410160.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:7   AAUUCAUAUGGAUUGAGUGAGAUU   30 Target Full Sequence	2.5	Sequence 8285 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008657651.2	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:960   AAUUCAUAUGGAUUGAGUGAGAUU   983 Target Full Sequence	2.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008657650.2	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:1039   AAUUCAUAUGGAUUGAGUGAGAUU   1062 Target Full Sequence	2.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008657652.2	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:1081   AAUUCAUAUGGAUUGAGUGAGAUU   1104 Target Full Sequence	2.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020542405.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:1149   AAUUCAUAUGGAUUGAGUGAGAUU   1172 Target Full Sequence	2.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020542404.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:1159   AAUUCAUAUGGAUUGAGUGAGAUU   1182 Target Full Sequence	2.5	PREDICTED: Zea mays craniofacial development protein 1 (LOC103635106), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT088422.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:297   AAUUCAUAUGGAUUGAGUGAGAUU   320 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0189N22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196996.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   ||*=||||*||||||||*|||||| targets:297   AAUUCAUAUGGAUUGAGUGAGAUU   320 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502518 (LOC100502518), mRNA	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   =|*=*|||*||||||||||=|||| targets:1919   GAUUGAUACGGAUUGAGGGGGAUU   1942 Target Full Sequence	2.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947467.1	ncRNA:24   UUUGGUAUCCCUAACUCCCUCUAA   1   =***||||*||||||||||=|||| targets:1227   GUUGCAUAUGGAUUGAGGGGGAUU   1250 Target Full Sequence	2.5	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget