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BaseInfo

ncRNA ID novel_zma_miR8789
Species Zea mays
Class miRNA
Genome position Chr9:4129237-4129419 [+]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 1 - AAUACUCCCUCCGUCCCAGGAUAU - 24
Stem-loop(if miRNA) --A       C          G       A     - C     UUU    UUGUC   UAAUACA          -----       GUA   -   CA
   AUACUCC UCCGUCCCAG AUAUAAG CGUAA C ACUUU   GUUC     CCA       AAAUGUGCUU     UCUCUAU   UAC GUA  U
   ||||||| |||||||||| ||||||| ||||| | |||||   ||||     |||       ||||||||||     |||||||   ||| |||
   UAUGAGG AGGCAGGGUC UAUAUUC GCAUU G UGAGA   CAAG     GGU       UUUACAUGAA     AGAGAUA   GUG CGU  C
CAA       U          A       C     A U     --C    UUUCC   -----UC          UUAAC       -UG   A   AG
Stem-loop sequence AAUACUCCCUCCGUCCCAGGAUAUAAGACGUAACCACUUUUUUGUUCUUGUCCCAUAAUACAAAAUGUGCUUUCUCUAUGUAUACGUACAUCGAUGCAGUGGUAUAGAGACAAUUAAGUACAUUUCUUGGCCUUUGAACCAGAGUUGAUUACGCCUUAUAUACUGGGACGGAUGGAGUAUAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU974289.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||=|||||||||||||||||*|
targets:347   AUAUUCUGGGACGGAGGGAGUACU   370

1.5 Zea mays clone 445101 mRNA sequence NA coding protein psRNATarget
XM_020546090.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||==|||||||||*||||||||
targets:3176   AUAUUUUGGGACGGAAGGAGUAUU   3199

2.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103641631), mRNA NA coding protein psRNATarget
BT039461.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||*|||||||||||||||||**
targets:2076   AUAUACUGGGACGGAGGGAGUACA   2099

2.5 Zea mays full-length cDNA clone ZM_BFc0014I07 mRNA, complete cds NA coding protein psRNATarget
NM_001147251.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||*|||||||||||||||||**
targets:2076   AUAUACUGGGACGGAGGGAGUACA   2099

2.5 Zea mays Regulator of Vps4 activity in the MVB pathway protein (LOC100272798), mRNA NA coding protein psRNATarget
EU974312.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *|||==||||||||||||||||*|
targets:691   CUAUUUUGGGACGGAGGGAGUAGU   714

2.5 Zea mays clone 445834 mRNA sequence NA coding protein psRNATarget
XM_020545715.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||=||||*||||||*|||||||
targets:4972   AUAUUCUGGAACGGAGUGAGUAUU   4995

2.5 PREDICTED: Zea mays Increased DNA methylation 1 (LOC103642225), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020545714.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||=||||*||||||*|||||||
targets:5019   AUAUUCUGGAACGGAGUGAGUAUU   5042

2.5 PREDICTED: Zea mays Increased DNA methylation 1 (LOC103642225), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008665537.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||=||||*||||||*|||||||
targets:5077   AUAUUCUGGAACGGAGUGAGUAUU   5100

2.5 PREDICTED: Zea mays Increased DNA methylation 1 (LOC103642225), transcript variant X2, mRNA NA coding protein psRNATarget
BT084952.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *|||*=|||||||||||||||||*
targets:35   CUAUGUUGGGACGGAGGGAGUAUA   58

2.0 Zea mays full-length cDNA clone ZM_BFb0213O06 mRNA, complete cds NA coding protein psRNATarget
XM_020547319.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  |||**|||||||||||||||||*|
targets:1358   AUAAACUGGGACGGAGGGAGUACU   1381

1.5 PREDICTED: Zea mays uncharacterized LOC100272265 (LOC100272265), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547673.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||*|||*||||||*||||||||
targets:16   AUAUACUGCGACGGACGGAGUAUU   39

2.5 PREDICTED: Zea mays Ubiquitin-specific protease family C19-related protein (LOC100280073), transcript variant X2, mRNA NA coding protein psRNATarget
EU957638.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  ||||*|||*|||||||||||||*|
targets:2008   AUAUACUGAGACGGAGGGAGUAAU   2031

2.5 Zea mays clone 1600726 cytochrome P450 CYP78A54 mRNA, complete cds NA coding protein psRNATarget
XM_008683379.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020537610.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X14, mRNA NA coding protein psRNATarget
XM_008683385.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008683384.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008683387.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X9, mRNA NA coding protein psRNATarget
XM_008683371.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008683366.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008683354.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008683360.2
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020537605.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020537592.1
ncRNA:24   UAUAGGACCCUGCCUCCCUCAUAA   1
  *||*==||||||*|||||||||||
targets:238   UUAAUUUGGGACAGAGGGAGUAUU   261

2.5 PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381413), transcript variant X2, mRNA NA coding protein psRNATarget
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