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BaseInfo

ncRNA ID	novel_zma_miR8788
Species	Zea mays
Class	miRNA
Genome position	Chr9:6129650-6129790 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	1 - GAUUGGUGUAACCGAACAAGACCU - 24
Stem-loop(if miRNA)	---GCA                  C   ----------          A              UUAAACCUCUCC     CC       UGUUCGGUUACACCAAUC AGA          AGGGGAUUAA UCCCCUCCUAGUCA            AAUCC  U       |||||||||||||||||| |||          |||||||||| ||||||||||||||            |||||       ACAAGCCAAUGUGGUUAG UCU          UCCCCUAAUU AGGGGAGGAUCAGU            UUAGG  U UCCAGA                  A   UGCCCUAACC          -              -----------U     UC
Stem-loop sequence	GCAUGUUCGGUUACACCAAUCCAGAAGGGGAUUAAAUCCCCUCCUAGUCAUUAAACCUCUCCAAUCCCCUUCUGGAUUUUGACUAGGAGGGGAUUAAUCCCCUCCAAUCCCGUUCUAGAUUGGUGUAACCGAACAAGACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ095217.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*|||||||||||||||||||| targets:35   AGGGCUUGUUCGGUUACACCAAUC   58 Target Full Sequence	0.0	TSA: Zea mays contig30870, mRNA sequence	NA	coding protein	psRNATarget
XM_008656925.2	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*|||||||||||||||||||| targets:19   AGGGCUUGUUCGGUUACACCAAUC   42 Target Full Sequence	0.0	PREDICTED: Zea mays OSJNBa0059D20.8-like protein (LOC100304325), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU968801.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*||||||||||||||=||||| targets:443   AGGGCUUGUUCGGUUACAUCAAUC   466 Target Full Sequence	1.5	Zea mays clone 324211 protein transport protein SEC61 gamma subunit mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157439.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*||||||||||||||=||||| targets:443   AGGGCUUGUUCGGUUACAUCAAUC   466 Target Full Sequence	1.5	Zea mays protein transport protein SEC61 gamma subunit (LOC100284544), mRNA	NA	coding protein	psRNATarget
XM_020542872.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   *||*|||||||||||||||||||| targets:1266   CGGGCUUGUUCGGUUACACCAAUC   1289 Target Full Sequence	0.0	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.3 (LOC103634808), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406796.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*|*|||||||||||||||||= targets:11   AGGGCAUGUUCGGUUACACCAAUU   34 Target Full Sequence	2.0	Sequence 4921 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238926.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*|*|||||||||||||||||= targets:11   AGGGCAUGUUCGGUUACACCAAUU   34 Target Full Sequence	2.0	Sequence 4921 from Patent EP2985353	NA	coding protein	psRNATarget
JB167257.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*|*|||||||||||||||||= targets:11   AGGGCAUGUUCGGUUACACCAAUU   34 Target Full Sequence	2.0	Sequence 4921 from Patent EP2559767	NA	coding protein	psRNATarget
EZ064120.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*=|||||||*||||||||||| targets:86   AGGCUUUGUUCGUUUACACCAAUC   109 Target Full Sequence	1.5	TSA: Zea mays contig65243, mRNA sequence	NA	coding protein	psRNATarget
EU948994.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*=|||||||*||||||||||| targets:461   AGGCUUUGUUCGUUUACACCAAUC   484 Target Full Sequence	1.5	Zea mays clone 393087 mRNA sequence	NA	coding protein	psRNATarget
BT041883.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*||||||||||||||*||||= targets:784   AGGGCUUGUUCGGUUACAACAAUU   807 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073E14 mRNA, complete cds	NA	coding protein	psRNATarget
BT062257.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*||||||||||||||*||||= targets:1083   AGGGCUUGUUCGGUUACAACAAUU   1106 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0234J14 mRNA, complete cds	NA	coding protein	psRNATarget
EU975659.1	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*||||||||||||||*||||= targets:2112   AGGGCUUGUUCGGUUACAACAAUU   2135 Target Full Sequence	2.5	Zea mays clone 495563 ankyrin protein kinase-like mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158998.2	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*||||||||||||||*||||= targets:2113   AGGGCUUGUUCGGUUACAACAAUU   2136 Target Full Sequence	2.5	Zea mays Ankyrin protein kinase-like (LOC100279910), mRNA	NA	coding protein	psRNATarget
XM_008673886.2	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*=|||||||*||||||||||| targets:2368   AGGCUUUGUUCGUUUACACCAAUC   2391 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100193045 (LOC100193045), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008661803.2	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*=|||||||*||||||||||| targets:1025   AGGCUUUGUUCGUUUACACCAAUC   1048 Target Full Sequence	1.5	PREDICTED: Zea mays protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 (LOC103639026), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672315.2	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   |||*=|||||||*||||||||||| targets:5435   AGGCUUUGUUCGUUUACACCAAUC   5458 Target Full Sequence	1.5	PREDICTED: Zea mays formin-like protein 5 (LOC103647807), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655395.2	ncRNA:24   UCCAGAACAAGCCAAUGUGGUUAG   1   *||*||||||||*||||||||||| targets:483   UGGCCUUGUUCGUUUACACCAAUC   506 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103633684 (LOC103633684), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT060810.1	ncRNA:24   UCCAGAA---CAAGCCAAUGUGGUUAG   1   ***||||---||||||||||||||||| targets:1482   CUUUCUUCACGUUCGGUUACACCAAUC   1508 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0053C16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148650.1	ncRNA:24   UCCAGAA---CAAGCCAAUGUGGUUAG   1   ***||||---||||||||||||||||| targets:1583   CUUUCUUCACGUUCGGUUACACCAAUC   1609 Target Full Sequence	3.0	Zea mays UDP-glycosyltransferase 75B1 (umc2700), mRNA	NA	coding protein	psRNATarget
BT042688.1	ncRNA:24   UCCAGAA---CAAGCCAAUGUGGUUAG   1   ***||||---||||||||||||||||| targets:1583   CUUUCUUCACGUUCGGUUACACCAAUC   1609 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0008P01 mRNA, complete cds	NA	coding protein	psRNATarget
EU971133.1	ncRNA:24   UCCAGAA---CAAGCCAAUGUGGUUAG   1   ***||||---||||||||||||||||| targets:1479   CUUUCUUCACGUUCGGUUACACCAAUC   1505 Target Full Sequence	3.0	Zea mays clone 358078 mRNA sequence	NA	coding protein	psRNATarget
LQ235158.1	ncRNA:21   AGAACAAGCCAAUGUGGUUAG   1   *||||||||*||||||||||| targets:1   GCUUGUUCGUUUACACCAAUC   21 Target Full Sequence	1.5	Sequence 1153 from Patent EP2985353	NA	coding protein	psRNATarget
JB163489.1	ncRNA:21   AGAACAAGCCAAUGUGGUUAG   1   *||||||||*||||||||||| targets:1   GCUUGUUCGUUUACACCAAUC   21 Target Full Sequence	1.5	Sequence 1153 from Patent EP2559767	NA	coding protein	psRNATarget
HI403028.1	ncRNA:21   AGAACAAGCCAAUGUGGUUAG   1   *||||||||*||||||||||| targets:1   GCUUGUUCGUUUACACCAAUC   21 Target Full Sequence	1.5	Sequence 1153 from Patent EP2074227	NA	coding protein	psRNATarget