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BaseInfo

ncRNA ID	novel_zma_miR8782
Species	Zea mays
Class	miRNA
Genome position	Chr9:93295055-93295240 [-]
Reference genome	RefGen_v4
Source	SRR4237221
Length	24
Mature sequence(if miRNA)	163 - ACGGUCUGCGGCCUGGUGCGAGGC - 186
Stem-loop(if miRNA)	--A       C       U    -GG      ---     G        CCGGAC     G GC       C    CG     C U    G  GG     - G    CGGUCUG GGCCUGG GCGA   CUAGGG   CUCCU CCUGACGG      GGUCC C  CCUGGGA CGGA  GUCCG G GUGC CA  GGCGA C G    ||||||| ||||||| ||||   ||||||   ||||| ||||||||      ||||| |  ||||||| ||||  ||||| | |||| ||  ||||| |    GCCGGGC UCGGAUC UGUU   GAUCCU   GAGGA GGGCUGCC      CCAGG G  GGACCCU GCUU  UAGGU C CGCG GU  CCGCU G A CCG       -       -    GAG      AGA     G        ------     - -A       C    --     - -    -  AG     A A
Stem-loop sequence	ACGGUCUGCGGCCUGGUGCGAGGCUAGGGCUCCUGCCUGACGGCCGGACGGUCCGCGCCCUGGGACCGGACGGUCCGCGUGUGCGCAGGGGCGACGGAAGAUCGCCGAUGGCGCCUGGAUUUCGCUCCCAGGAGGGACCCCGUCGGGGAGGAGAGAUCCUAGGAGUUGUCUAGGCUCGGGCCGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001196968.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   |||||||||||||||||=|||||| targets:1308   GCCUCGCACCAGGCCGCGGACCGU   1331 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   |||*|||||||||||||=|||||| targets:1235   GCCGCGCACCAGGCCGCGGACCGU   1258 Target Full Sequence	1.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   |||||||||||||||||=|||||| targets:1308   GCCUCGCACCAGGCCGCGGACCGU   1331 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   |||*|||||||||||||=|||||| targets:1235   GCCGCGCACCAGGCCGCGGACCGU   1258 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   |||||||||||||||||=|||||| targets:2751   GCCUCGCACCAGGCCGCGGACCGU   2774 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   |||**||||||||||||=|||||| targets:2678   GCCGGGCACCAGGCCGCGGACCGU   2701 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
BT061973.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   *|=||*|||==||||||||||||| targets:583   ACUUCCCACUGGGCCGCAGACCGU   606 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0202M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001155572.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   *|=||*|||==||||||||||||| targets:628   ACUUCCCACUGGGCCGCAGACCGU   651 Target Full Sequence	3.0	Zea mays Actin-related protein 2/3 complex subunit 2A (cl55281_1), mRNA	NA	coding protein	psRNATarget
EU961844.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   *|=||*|||==||||||||||||| targets:628   ACUUCCCACUGGGCCGCAGACCGU   651 Target Full Sequence	3.0	Zea mays clone 238586 ARP2/3 complex 34 kDa subunit mRNA, complete cds	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   CGGAGCGUGGUCCGGCGUCUGGCA   1   |=|**||*|||||||||=|||||| targets:83   GUCCGGCCCCAGGCCGCGGACCGU   106 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget