Search result

BaseInfo

ncRNA ID novel_zma_miR8779
Species Zea mays
Class miRNA
Genome position Chr9:138954971-138955043 [-]
Reference genome RefGen_v4
Source SRR4237221;SRR4237225
Length 24
Mature sequence(if miRNA) 1 - ACAGCCUAUGGCGCCGAGCAAAGG - 24
Stem-loop(if miRNA) --AGA                               
     GCUCGGCGCCAUAGGCUGUGGCGCCGAGCUGU
     |||||||||||||||||||||||||||||||G
     CGAGCCGCGGUAUCCGACACCGCGGCUCGAUU
GGAAA                               
Stem-loop sequence AGAGCUCGGCGCCAUAGGCUGUGGCGCCGAGCUGUGUUAGCUCGGCGCCACAGCCUAUGGCGCCGAGCAAAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT034188.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  ||||||||||||||||||||||*|
targets:640   CCUUUGCUCGGCGCCAUAGGCUAU   663

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
BT034188.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:676   ACACAGCUCGGCGCCAUAGGCUAU   699

1.5 Zea mays full-length cDNA clone ZM_BFc0029I19 mRNA, complete cds NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  ||||||||||||||||||||||*|
targets:640   CCUUUGCUCGGCGCCAUAGGCUAU   663

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
NM_001137355.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:676   ACACAGCUCGGCGCCAUAGGCUAU   699

1.5 Zea mays SAUR56-auxin-responsive SAUR family member (LOC100191931), mRNA NA coding protein psRNATarget
XM_020551169.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  |||||||||||||||||||||*||
targets:1900   CCUUUGCUCGGCGCCAUAGGCCGU   1923

1.5 PREDICTED: Zea mays subtilisin-like protease SBT3.10 (LOC103652446), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020551168.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  |||||||||||||||||||||*||
targets:1909   CCUUUGCUCGGCGCCAUAGGCCGU   1932

1.5 PREDICTED: Zea mays subtilisin-like protease SBT3.10 (LOC103652446), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020541199.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:38   ACACAGCUCGGCGCCAUAGGCUAU   61

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655193.2
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:96   ACACAGCUCGGCGCCAUAGGCUAU   119

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008655192.2
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:96   ACACAGCUCGGCGCCAUAGGCUAU   119

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA NA coding protein psRNATarget
HI402936.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:28   ACACAGCUCGGCGCCAUAGGCUAU   51

1.5 Sequence 1061 from Patent EP2074227 NA coding protein psRNATarget
JB163397.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:28   ACACAGCUCGGCGCCAUAGGCUAU   51

1.5 Sequence 1061 from Patent EP2559767 NA coding protein psRNATarget
LQ235066.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:28   ACACAGCUCGGCGCCAUAGGCUAU   51

1.5 Sequence 1061 from Patent EP2985353 NA coding protein psRNATarget
LQ238045.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||*|||||||
targets:55   ACGAAGCUCGGCGCCACAGGCUGU   78

1.5 Sequence 4040 from Patent EP2985353 NA coding protein psRNATarget
JB166376.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||*|||||||
targets:55   ACGAAGCUCGGCGCCACAGGCUGU   78

1.5 Sequence 4040 from Patent EP2559767 NA coding protein psRNATarget
HI405915.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||*|||||||
targets:55   ACGAAGCUCGGCGCCACAGGCUGU   78

1.5 Sequence 4040 from Patent EP2074227 NA coding protein psRNATarget
XM_020541198.1
ncRNA:24   GGAAACGAGCCGCGGUAUCCGACA   1
  *|***|||||||||||||||||*|
targets:36   ACACAGCUCGGCGCCAUAGGCUAU   59

1.5 PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.