Search result

BaseInfo

ncRNA ID	novel_zma_miR8774
Species	Zea mays
Class	miRNA
Genome position	Chr9:139886629-139886795 [+]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237226
Length	24
Mature sequence(if miRNA)	144 - ACAUUAGUCCAUAGAAACCAAACA - 167
Stem-loop(if miRNA)	--           G                   ACA         A       U   -      AC                 C   UUUGGUUUCUA GGACUAAUGUUUAGUCCCU   UUUUAUUCC UUUUAGU CUA AAAUUG  AAAUAUAGAAACUAAAA U   ||||||||||| |||||||||||||||||||   ||||||||| ||||||| ||| ||||||  ||||||||||||||||| U   AAACCAAAGAU CCUGAUUACAAAUCAGGGA   AAAAUAAGG AAAAUCA GAU UUUAAC  UUUAUAUCUUUGAUUUU U AC           A                   AAC         A       -   A      GA                 A
Stem-loop sequence	UUUGGUUUCUAGGGACUAAUGUUUAGUCCCUACAUUUUAUUCCAUUUUAGUUCUAAAAUUGACAAAUAUAGAAACUAAAACUUUAUUUUAGUUUCUAUAUUUAGCAAUUUAUAGACUAAAAAGGAAUAAAACAAAGGGACUAAACAUUAGUCCAUAGAAACCAAACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676145.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||||||||||||| targets:831   UGUUUGGUUUCUAUGGACUAAUGU   854 Target Full Sequence	0.0	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||||=||||||||||| targets:1642   UGUUUGGUUUCUGUGGACUAAUGU   1665 Target Full Sequence	1.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
LQ235177.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:61   UGUUUGGUUUCUAGGGACUAAUGU   84 Target Full Sequence	1.5	Sequence 1172 from Patent EP2985353	NA	coding protein	psRNATarget
JB163508.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:61   UGUUUGGUUUCUAGGGACUAAUGU   84 Target Full Sequence	1.5	Sequence 1172 from Patent EP2559767	NA	coding protein	psRNATarget
HI403047.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:61   UGUUUGGUUUCUAGGGACUAAUGU   84 Target Full Sequence	1.5	Sequence 1172 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235171.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1166 from Patent EP2985353	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
HI403041.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1166 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
JB163502.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:3   UGUUUGGUUUCUAGGGACUAAUGU   26 Target Full Sequence	1.5	Sequence 1166 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:5   UGUUUGGUUUCUAGGGACUAAUGU   28 Target Full Sequence	1.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
JB163501.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:5   UGUUUGGUUUCUAGGGACUAAUGU   28 Target Full Sequence	1.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
HI403040.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:5   UGUUUGGUUUCUAGGGACUAAUGU   28 Target Full Sequence	1.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
EU942443.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:466   UGUUUGGUUUCUAGGGACUAAUGU   489 Target Full Sequence	1.5	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:753   UGUUUGGUUUCUAGGGACUAAUGU   776 Target Full Sequence	1.5	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:1138   UGUUUGGUUUCUAGGGACUAAUGU   1161 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:1147   UGUUUGGUUUCUAGGGACUAAUGU   1170 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:1150   UGUUUGGUUUCUAGGGACUAAUGU   1173 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:1156   UGUUUGGUUUCUAGGGACUAAUGU   1179 Target Full Sequence	1.5	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:1147   UGUUUGGUUUCUAGGGACUAAUGU   1170 Target Full Sequence	1.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:973   UGUUUGGUUUCUAGGGACUAAUGU   996 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543841.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:921   UGUUUGGUUUCUAGGGACUAAUGU   944 Target Full Sequence	1.5	PREDICTED: Zea mays lo1 pI allergen homolog 1 (lop1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956227.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:1243   UGUUUGGUUUCUAGGGACUAAUGU   1266 Target Full Sequence	1.5	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:1542   UGUUUGGUUUCUAGGGACUAAUGU   1565 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542419.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:2145   UGUUUGGUUUCUAGGGACUAAUGU   2168 Target Full Sequence	1.5	PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA	NA	coding protein	psRNATarget
XM_020550311.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   |||||||||||||*|||||||||| targets:2448   UGUUUGGUUUCUAGGGACUAAUGU   2471 Target Full Sequence	1.5	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 67-like (LOC103650585), mRNA	NA	coding protein	psRNATarget
EZ092607.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||=|||||||||||*| targets:59   UGUUUGGUUUUUAUGGACUAAUUU   82 Target Full Sequence	2.5	TSA: Zea mays contig28256, mRNA sequence	NA	coding protein	psRNATarget
BT064233.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||=||*|||||||||| targets:2079   UGUUUGGUUUUUAGGGACUAAUGU   2102 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0150L11 mRNA, complete cds	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||=||*|||||||||| targets:2073   UGUUUGGUUUUUAGGGACUAAUGU   2096 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||=||*|||||||||| targets:2073   UGUUUGGUUUUUAGGGACUAAUGU   2096 Target Full Sequence	2.5	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:19   UGUUUGGUUUGUAGGGACUAAUGU   42 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:19   UGUUUGGUUUGUAGGGACUAAUGU   42 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:19   UGUUUGGUUUGUAGGGACUAAUGU   42 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
EZ061563.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:321   UGUUUGGUUUAUAGGGACUAAUGU   344 Target Full Sequence	2.5	TSA: Zea mays contig62685, mRNA sequence	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:812   UGUUUGGUUUAUAGGGACUAAUGU   835 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675552.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:1296   UGUUUGGUUUAUAGGGACUAAUGU   1319 Target Full Sequence	2.5	PREDICTED: Zea mays LOB domain-containing protein 40 (LOC103649851), mRNA	NA	coding protein	psRNATarget
NM_001156492.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:1165   UGUUUGGUUUAUAGGGACUAAUGU   1188 Target Full Sequence	2.5	Zea mays protein COQ10 A (LOC100283591), mRNA	NA	coding protein	psRNATarget
EU965238.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:1165   UGUUUGGUUUAUAGGGACUAAUGU   1188 Target Full Sequence	2.5	Zea mays clone 284715 protein COQ10 A mRNA, complete cds	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:144   UGUUUGGUUUGUAGGGACUAAUGU   167 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT083492.2	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   ||||||||||*||*|||||||||| targets:650   UGUUUGGUUUAUAGGGACUAAUGU   673 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0003B18 mRNA, complete cds	NA	coding protein	psRNATarget
JB163522.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   *||||*|||||||*|||||||||| targets:3   GGUUUAGUUUCUAGGGACUAAUGU   26 Target Full Sequence	2.5	Sequence 1186 from Patent EP2559767	NA	coding protein	psRNATarget
HI403061.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   *||||*|||||||*|||||||||| targets:3   GGUUUAGUUUCUAGGGACUAAUGU   26 Target Full Sequence	2.5	Sequence 1186 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235191.1	ncRNA:24   ACAAACCAAAGAUACCUGAUUACA   1   *||||*|||||||*|||||||||| targets:3   GGUUUAGUUUCUAGGGACUAAUGU   26 Target Full Sequence	2.5	Sequence 1186 from Patent EP2985353	NA	coding protein	psRNATarget