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BaseInfo

ncRNA ID	novel_zma_miR8771
Species	Zea mays
Class	miRNA
Genome position	Chr8:6710681-6710798 [+]
Reference genome	RefGen_v4
Source	SRR4237221
Length	23
Mature sequence(if miRNA)	1 - CGGAACGAGAUCCUCUGACGUGG - 23
Stem-loop(if miRNA)	--    -A  A A             GAAG  GGCACUGCCGCGUGGCCCCCGUGUGCGAC   CGGA  CG G UCCUCUGACGUGG    AG                             A   ||||  || | |||||||||||||    ||                             G   GCCU  GC C AGGAGACUGCAUC    CG                             G GA    CG  - A             ---A  UCCCCCGUCGUCCCAGUGACGCGCGCCCG
Stem-loop sequence	CGGAACGAGAUCCUCUGACGUGGGAAGAGGGCACUGCCGCGUGGCCCCCGUGUGCGACAGGGCCCGCGCGCAGUGACCCUGCUGCCCCCUGCACUACGUCAGAGGAACCGGCUCCGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT053816.1	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||| targets:153   CCACGUCAGAGGAUCUCGUUCCG   175 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0202M09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152233.1	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||| targets:153   CCACGUCAGAGGAUCUCGUUCCG   175 Target Full Sequence	0.0	Zea mays Nucleobase-ascorbate transporter 2 (AY109981), mRNA	NA	coding protein	psRNATarget
BT066603.1	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||| targets:217   CCACGUCAGAGGAUCUCGUUCCG   239 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0040E16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008669540.2	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||| targets:412   CCACGUCAGAGGAUCUCGUUCCG   434 Target Full Sequence	0.0	PREDICTED: Zea mays Nucleobase-ascorbate transporter 2 (AY109981), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008669539.2	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||| targets:476   CCACGUCAGAGGAUCUCGUUCCG   498 Target Full Sequence	0.0	PREDICTED: Zea mays Nucleobase-ascorbate transporter 2 (AY109981), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001147380.1	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||* targets:115   CCACGUCAGAGGAUCUCGUUCCC   137 Target Full Sequence	1.0	Zea mays SNARE associated Golgi protein family (pco123983), mRNA	NA	coding protein	psRNATarget
BT039800.1	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||* targets:115   CCACGUCAGAGGAUCUCGUUCCC   137 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0045M15 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008683183.2	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||* targets:121   CCACGUCAGAGGAUCUCGUUCCC   143 Target Full Sequence	1.0	PREDICTED: Zea mays SNARE associated Golgi protein family (pco123983), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008663684.2	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   ||||||||||||||||||||||* targets:64   CCACGUCAGAGGAUCUCGUUCCC   86 Target Full Sequence	1.0	PREDICTED: Zea mays triacylglycerol lipase (LOC100281750), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947071.1	ncRNA:23   GGU-GCAGUCUCCUAGAGCAAGGC   1   |||-|||||||||||||||||||* targets:84   CCAACGUCAGAGGAUCUCGUUCCA   107 Target Full Sequence	1.0	Zea mays clone 326726 mRNA sequence	NA	coding protein	psRNATarget
AY106829.1	ncRNA:23   GGU-GCAGUCUCCUAGAGCAAGGC   1   |||-|||||||||||||||||||* targets:68   CCAACGUCAGAGGAUCUCGUUCCA   91 Target Full Sequence	1.0	Zea mays PCO076355 mRNA sequence	NA	coding protein	psRNATarget
XM_020548664.1	ncRNA:23   GGU-GCAGUCUCCUAGAGCAAGGC   1   |||-|||||||||||||||||||* targets:108   CCAACGUCAGAGGAUCUCGUUCCA   131 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100278623), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672552.2	ncRNA:23   GGU-GCAGUCUCCUAGAGCAAGGC   1   |||-|||||||||||||||||||* targets:302   CCAACGUCAGAGGAUCUCGUUCCA   325 Target Full Sequence	1.0	PREDICTED: Zea mays hypothetical protein (LOC100278623), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU967823.1	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   =*|*||=|||||||||||||||* targets:18   UGAAGUUAGAGGAUCUCGUUCCA   40 Target Full Sequence	2.0	Zea mays clone 306390 50S ribosomal protein L29 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001157196.1	ncRNA:23   GGUGCAGUCUCCUAGAGCAAGGC   1   =*|*||=|||||||||||||||* targets:18   UGAAGUUAGAGGAUCUCGUUCCA   40 Target Full Sequence	2.0	Zea mays 50S ribosomal protein L29 (LOC100284301), mRNA	NA	coding protein	psRNATarget