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BaseInfo

ncRNA ID	novel_zma_miR8761
Species	Zea mays
Class	miRNA
Genome position	Chr3:89087481-89087649 [+]
Reference genome	RefGen_v4
Source	SRR1997865
Length	23
Mature sequence(if miRNA)	1 - AGGCUGGGCUCGGGCGAGGCAGA - 23
Stem-loop(if miRNA)	--  GC   G        AG   --   A    U   GA G    -GG    G      CGAGGC          UU  GA G     GC   AG  UGG CUCGGGCG  GCA  GAG CUUC CCU  G CCGA   CUGG CUCGGA      GGAGAUCUUC  CC  G CUGAG  U   ||  ||| ||||||||  |||  ||| |||| |||  | ||||   |||| ||||||      ||||||||||  ||  | |||||   UC  GCC GAGCCCGC  UGU  CUC GAGG GGA  C GGCU   GGCC GAGCCU      CUUCUAGAGG  GG  C GGCUC  G GC  AA   G        GU   UC   -    C   -G G    GGA    G      -----U          -C  AG G     GG
Stem-loop sequence	AGGCUGGGCUCGGGCGAGGCAGAGACUUCUCCUGAGGCCGAGGCUGGGCUCGGACGAGGCGGAGAUCUUCUUCCGAGGCUGAGGCUGGGCUCGGGCGAGGCGGAGAUCUUCUUCCGAGGCCGGAGGUCGGGCGAGGCGGAGCUCCUUGUUGCGCCCGAGGCCGAACUCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020541001.1	ncRNA:23   AGA-CGGAGCGGGCUCGGGUCGGA   1   |||-|||||||||||||||||||| targets:4777   UCUCGCCUCGCCCGAGCCCAGCCU   4800 Target Full Sequence	0.0	PREDICTED: Zea mays plasma membrane ATPase 2-like (LOC103632998), transcript variant X36, mRNA	NA	coding protein	psRNATarget
XM_020539680.1	ncRNA:23   AGA--CGGAGCGGGCUCGGGUCGGA   1   |||--|||||||||||||||||||| targets:1163   UCUUCGCCUCGCCCGAGCCCAGCCU   1187 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC109940245 (LOC109940245), mRNA	NA	coding protein	psRNATarget
XM_008654039.1	ncRNA:23   AGACGGAGCGGGCUCGGGUCGGA   1   ||-|||||||||||||||||||| targets:27   UC-GCCUCGCCCGAGCCCAGCCU   48 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC103632220 (LOC103632220), mRNA	NA	coding protein	psRNATarget
EU952221.1	ncRNA:23   AGACGGAGCGGGCUCGGGUCGGA   1   ||-|||||||||||||||||||| targets:32   UC-GCCUCGCCCGAGCCCAGCCU   53 Target Full Sequence	0.0	Zea mays clone 1229283 mRNA sequence	NA	coding protein	psRNATarget
EZ090153.1	ncRNA:23   AGACGGAGCGGGCUCGGGUCGGA   1   ***||||||||||||||=||||| targets:58   CACGCCUCGCCCGAGCCUAGCCU   80 Target Full Sequence	1.5	TSA: Zea mays contig25799, mRNA sequence	NA	coding protein	psRNATarget
EU940901.1	ncRNA:23   AGA-CGGAGCGGGCUCGGGUCGGA   1   |||-|||||*|||||||||||||| targets:383   UCUCGCCUCACCCGAGCCCAGCCU   406 Target Full Sequence	1.0	Zea mays clone 1168199 mRNA sequence	NA	coding protein	psRNATarget
EU940899.1	ncRNA:23   AGAC-GGAGCGGGCUCGGGUCGGA   1   |||*-||||||||||||||||||| targets:683   UCUCACCUCGCCCGAGCCCAGCCU   706 Target Full Sequence	2.0	Zea mays clone 1168123 mRNA sequence	NA	coding protein	psRNATarget
XM_020541624.1	ncRNA:23   AGAC-GGAGCGGGCUCGGGUCGGA   1   |||*-||||||||||||||||||| targets:677   UCUCACCUCGCCCGAGCCCAGCCU   700 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC103644648 (LOC103644648), mRNA	NA	coding protein	psRNATarget