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BaseInfo

ncRNA ID	novel_zma_miR8759
Species	Zea mays
Class	miRNA
Genome position	Chr1:172873075-172873132 [+]
Reference genome	RefGen_v4
Source	SRR4237221;SRR4237225;SRR4237227
Length	21
Mature sequence(if miRNA)	1 - GAUUGGAGGGGAUUGAGGAGG - 21
Stem-loop(if miRNA)	--                  A      GA   GAUUGGAGGGGAUUGAGG GGAGAU  A   |||||||||||||||||| ||||||   CUAACCUCCCCUAACUCC CCUUUA  C CU                  A      AU
Stem-loop sequence	GAUUGGAGGGGAUUGAGGAGGAGAUGAACUAAUUUCCACCUCAAUCCCCUCCAAUCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163816.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   =|||||||||||||||||||| targets:31   UCUCCUCAAUCCCCUCCAAUC   51 Target Full Sequence	0.0	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   =|||||||||||||||||||| targets:31   UCUCCUCAAUCCCCUCCAAUC   51 Target Full Sequence	0.0	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   =|||||||||||||||||||| targets:31   UCUCCUCAAUCCCCUCCAAUC   51 Target Full Sequence	0.0	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163479.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   |||=|||||||||||||=||| targets:55   CCUUCUCAAUCCCCUCCGAUC   75 Target Full Sequence	2.5	Sequence 1143 from Patent EP2559767	NA	coding protein	psRNATarget
HI403018.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   |||=|||||||||||||=||| targets:55   CCUUCUCAAUCCCCUCCGAUC   75 Target Full Sequence	2.5	Sequence 1143 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235148.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   |||=|||||||||||||=||| targets:55   CCUUCUCAAUCCCCUCCGAUC   75 Target Full Sequence	2.5	Sequence 1143 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||||||||||| targets:33   CCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	1.0	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||||||||||| targets:33   CCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	1.0	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||||||||||| targets:33   CCCCCUCAAUCCCCUCCAAUC   53 Target Full Sequence	1.0	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235420.1	ncRNA:21   GGAG-GAGUUAGGGGAGGUUAG   1   =|||-||||||||||||||||| targets:70   UCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.0	Sequence 1415 from Patent EP2985353	NA	coding protein	psRNATarget
HI403290.1	ncRNA:21   GGAG-GAGUUAGGGGAGGUUAG   1   =|||-||||||||||||||||| targets:70   UCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.0	Sequence 1415 from Patent EP2074227	NA	coding protein	psRNATarget
JB163751.1	ncRNA:21   GGAG-GAGUUAGGGGAGGUUAG   1   =|||-||||||||||||||||| targets:70   UCUCACUCAAUCCCCUCCAAUC   91 Target Full Sequence	2.0	Sequence 1415 from Patent EP2559767	NA	coding protein	psRNATarget
BT063222.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   |=|||||||||||=||||||= targets:280   CUUCCUCAAUCCCUUCCAAUU   300 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0039H24 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156635.2	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   |=|||||||||||=||||||= targets:280   CUUCCUCAAUCCCUUCCAAUU   300 Target Full Sequence	2.5	Zea mays putative histone chaperone ASF1A (umc2323), transcript variant 2, mRNA	NA	coding protein	psRNATarget
AY106251.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   |=|||||||||||=||||||= targets:279   CUUCCUCAAUCCCUUCCAAUU   299 Target Full Sequence	2.5	Zea mays PCO064838 mRNA sequence	NA	coding protein	psRNATarget
BT088155.1	ncRNA:21   GGAG-GAGUUAGGGGAGGUUAG   1   =|||-||||||||||||||||| targets:1463   UCUCUCUCAAUCCCCUCCAAUC   1484 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   =|*|||||||||||||||||| targets:76   UCACCUCAAUCCCCUCCAAUC   96 Target Full Sequence	1.0	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   =|*|||||||||||||||||| targets:42   UCACCUCAAUCCCCUCCAAUC   62 Target Full Sequence	1.0	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||||||=|||| targets:1799   CCCCCUCAAUCCCCUCUAAUC   1819 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*||||||||||||||=||| targets:2151   CCCCCUCAAUCCCCUCCGAUC   2171 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672733.2	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||=|||||||| targets:2430   CCACCUCAAUCCUCUCCAAUC   2450 Target Full Sequence	2.5	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*||||||||||||||=||| targets:3176   CCCCCUCAAUCCCCUCCGAUC   3196 Target Full Sequence	2.5	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020546477.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||||||||=|| targets:11   CCCCCUCAAUCCCCUCCAGUC   31 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
XM_020547122.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||=|||||||||||||= targets:292   CCACCUUAAUCCCCUCCAAUU   312 Target Full Sequence	3.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547119.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||=|||||||||||||= targets:400   CCACCUUAAUCCCCUCCAAUU   420 Target Full Sequence	3.0	PREDICTED: Zea mays putative leucine-rich repeat receptor-like protein kinase family protein (LOC100217020), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547387.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   =|||||*|||=|||||||||| targets:2364   UCUCCUAAAUUCCCUCCAAUC   2384 Target Full Sequence	2.5	PREDICTED: Zea mays RING/U-box superfamily protein (LOC100193086), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI406133.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||*|||||||| targets:87   CCACCUCAAUCCACUCCAAUC   107 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||*|||||||| targets:87   CCACCUCAAUCCACUCCAAUC   107 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
JB166594.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||*|||||||| targets:87   CCACCUCAAUCCACUCCAAUC   107 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
EU964801.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   *||||*|||||||=||||||| targets:485   ACUCCACAAUCCCUUCCAAUC   505 Target Full Sequence	2.5	Zea mays clone 281630 mRNA sequence	NA	coding protein	psRNATarget
EU943240.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||*|||||||| targets:574   CCACCUCAAUCCACUCCAAUC   594 Target Full Sequence	2.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
EU966099.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ==||||||||||||||||*|= targets:638   UUUCCUCAAUCCCCUCCACUU   658 Target Full Sequence	2.5	Zea mays clone 291725 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU965489.1	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||*|||||||| targets:1112   CCACCUCAAUCCACUCCAAUC   1132 Target Full Sequence	2.5	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:21   GGAGGAGUUAGGGGAGGUUAG   1   ||*|||||||||*|||||||| targets:2081   CCACCUCAAUCCACUCCAAUC   2101 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
NM_001348011.1	ncRNA:21   GGAGG---AGUUAGGGGAGGUUAG   1   **|||---|||||||||||||||| targets:437   AAUCCAUAUCAAUCCCCUCCAAUC   460 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100277538), mRNA	NA	coding protein	psRNATarget
XM_020539810.1	ncRNA:21   GGAGG---AGUUAGGGGAGGUUAG   1   **|||---|||||||||||||||| targets:691   AAUCCGUAUCAAUCCCCUCCAAUC   714 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA	NA	coding protein	psRNATarget
EU956568.1	ncRNA:21   GGAGG---AGUUAGGGGAGGUUAG   1   **|||---|||||||||||||||| targets:1622   AAUCCGUAUCAAUCCCCUCCAAUC   1645 Target Full Sequence	3.0	Zea mays clone 1566799 mRNA sequence	NA	coding protein	psRNATarget