Search result

BaseInfo

ncRNA ID novel_zma_miR8753
Species Zea mays
Class miRNA
Genome position Chr7:97647045-97647140 [+]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 73 - AGAUUUGAGUUUCUAAACUAGCCC - 96
Stem-loop(if miRNA) --  G                 UC      -      A    UUAAG  G
  GC AGUUUGGAAACUCAAAU  CUUUUU AUUGAA GGGA     GA A
  || |||||||||||||||||  |||||| |||||| ||||     || A
  CG UCAAAUCUUUGAGUUUA  GAAAAA UGACUU CCCU     CU A
CC  A                 GA      A      -    ---UA  A
Stem-loop sequence GCGAGUUUGGAAACUCAAAUUCCUUUUUAUUGAAAGGGAUUAAGGAGAAAAUCAUUCCCUUCAGUAAAAAAGAGAUUUGAGUUUCUAAACUAGCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ095217.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||||||=|||||||||||||
targets:109   GGGCUAGUUUGGAAACUCAAAUCU   132

1.0 TSA: Zea mays contig30870, mRNA sequence NA coding protein psRNATarget
XM_008676335.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||||||=||||||||||||*
targets:4309   GGGCUAGUUUGGAAACUCAAAUCC   4332

2.0 PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008676333.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||||||=||||||||||||*
targets:4296   GGGCUAGUUUGGAAACUCAAAUCC   4319

2.0 PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676336.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||||||=||||||||||||*
targets:4282   GGGCUAGUUUGGAAACUCAAAUCC   4305

2.0 PREDICTED: Zea mays Serine/arginine repetitive matrix protein 2 isoform 4 (LOC103650763), transcript variant X3, mRNA NA coding protein psRNATarget
BT068626.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  *|||||||||=|||||||||||||
targets:710   AGGCUAGUUUGGAAACUCAAAUCU   733

1.0 Zea mays full-length cDNA clone ZM_BFb0358G13 mRNA, complete cds NA coding protein psRNATarget
BT084379.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||||||=||||||||||||*
targets:198   GGGCUAGUUUGGAAACUCAAAUCC   221

2.0 Zea mays full-length cDNA clone ZM_BFb0107D05 mRNA, complete cds NA coding protein psRNATarget
EU941872.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||||||=||||||||||||*
targets:30   GGGCUAGUUUGGAAACUCAAAUCC   53

2.0 Zea mays clone 1471472 mRNA sequence NA coding protein psRNATarget
EZ076597.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||*|||=|||||||||||||
targets:36   GGGCUAAUUUGGAAACUCAAAUCU   59

2.0 TSA: Zea mays contig12234, mRNA sequence NA coding protein psRNATarget
XM_020545649.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  ||||||||||*||||||||||||*
targets:650   GGGCUAGUUUUGAAACUCAAAUCC   673

2.0 PREDICTED: Zea mays zinc finger BED domain-containing protein DAYSLEEPER-like (LOC109942989), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008666766.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  |*||||||||=||||||||||||*
targets:5275   GUGCUAGUUUGGAAACUCAAAUCC   5298

2.0 PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546797.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  |*||||||||=||||||||||||*
targets:5141   GUGCUAGUUUGGAAACUCAAAUCC   5164

2.0 PREDICTED: Zea mays protein TIFY 11d (LOC103643602), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649902.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  *|*|||||||||||||||||||=|
targets:1611   AGCCUAGUUUAGAAACUCAAAUUU   1634

1.5 PREDICTED: Zea mays Electron carrier/ iron ion binding protein (cl22526_1), transcript variant X1, mRNA NA coding protein psRNATarget
BT067571.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  *|*|||||||||||||||||||=|
targets:1568   AGCCUAGUUUAGAAACUCAAAUUU   1591

1.5 Zea mays full-length cDNA clone ZM_BFc0088A12 mRNA, complete cds NA coding protein psRNATarget
NM_001349063.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  *|*|||||||||||||||||||=|
targets:1581   AGCCUAGUUUAGAAACUCAAAUUU   1604

1.5 Zea mays Electron carrier/ iron ion binding protein (cl22526_1), mRNA NA coding protein psRNATarget
BT064254.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  *|*|||||||||||||||||||=|
targets:1581   AGCCUAGUUUAGAAACUCAAAUUU   1604

1.5 Zea mays full-length cDNA clone ZM_BFc0153A19 mRNA, complete cds NA coding protein psRNATarget
XM_008672733.2
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  |*||||||||=*||||||||||||
targets:2364   GAGCUAGUUUGAAAACUCAAAUCU   2387

2.5 PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA NA coding protein psRNATarget
EU968273.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  |**|||||||=||||||||||||*
targets:709   GCUCUAGUUUGGAAACUCAAAUCC   732

2.0 Zea mays clone 318071 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU976682.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  |**|||||||=||||||||||||*
targets:642   GCUCUAGUUUGGAAACUCAAAUCC   665

2.0 Zea mays clone 987107 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT037978.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  |**|||||||=||||||||||||*
targets:672   GCUCUAGUUUGGAAACUCAAAUCC   695

2.0 Zea mays full-length cDNA clone ZM_BFb0205G16 mRNA, complete cds NA coding protein psRNATarget
NM_001301489.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  |**|||||||=||||||||||||*
targets:672   GCUCUAGUUUGGAAACUCAAAUCC   695

2.0 Zea mays hypothetical protein (LOC103645754), mRNA NA coding protein psRNATarget
XM_008653364.2
ncRNA:23   CCGAUCAAAUCUUUGAGUUUAGA   1
  ||=*=|||||||||||||||||*
targets:1   GGUCGGUUUAGAAACUCAAAUCC   23

2.0 PREDICTED: Zea mays DNA-binding protein (Baf1R-1), transcript variant X1, mRNA NA coding protein psRNATarget
EU941385.1
ncRNA:24   CCCGAUCAAAUCUUUGAGUUUAGA   1
  *|*|*=||||||||||||=|||||
targets:549   UGACGGGUUUAGAAACUCGAAUCU   572

2.5 Zea mays clone 1448802 mRNA sequence NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.