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BaseInfo

ncRNA ID novel_zma_miR8745
Species Zea mays
Class miRNA
Genome position Chr7:30715240-30715382 [-]
Reference genome RefGen_v4
Source SRR4237221
Length 24
Mature sequence(if miRNA) 1 - AGAGCUAACCGAACAAGCCCUGAG - 24
Stem-loop(if miRNA) --G                -   C    A  CA       GA       G  AAAAAUCGA   GAAGUUUGACUU
   AGGGCUUGUUCGGUUA UUC CAAU CA  UGGAUUG  UGGGAUU GA         GAA            G
   |||||||||||||||| ||| |||| ||  |||||||  ||||||| ||         |||
   UCCCGAACAAGCCAAU GAG GUUA GU  ACCUAAC  ACCCUAA CU         CCC            U
GAG                C   A    G  AC       UC       A  --------A   AAACUUAGGGUU
Stem-loop sequence GAGGGCUUGUUCGGUUAUUCCCAAUACACAUGGAUUGGAUGGGAUUGGAAAAAAUCGAGAAGAAGUUUGACUUGUUUGGGAUUCAAACCCAUCAAAUCCCACUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCUGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY104367.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||||||||||||||||||||||||
targets:608   CUCAGGGCUUGUUCGGUUAGCUCU   631

0.0 Zea mays PCO134486 mRNA sequence NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||||||||||||||||||||||||
targets:675   CUCAGGGCUUGUUCGGUUAGCUCU   698

0.0 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||||||||||||||||||||||||
targets:675   CUCAGGGCUUGUUCGGUUAGCUCU   698

0.0 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
EU963259.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||||||||||||||||||||||||
targets:918   CUCAGGGCUUGUUCGGUUAGCUCU   941

0.0 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
BT018247.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||=|||||||||||||||||||||
targets:366   CUUAGGGCUUGUUCGGUUAGCUCU   389

0.0 Zea mays clone EL01N0563E06.c mRNA sequence NA coding protein psRNATarget
BT086570.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||=|||||||||||||||||||||
targets:122   CUUAGGGCUUGUUCGGUUAGCUCU   145

0.0 Zea mays full-length cDNA clone ZM_BFc0184M19 mRNA, complete cds NA coding protein psRNATarget
BT018572.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||=|||||||||||||||||||||
targets:1745   CUUAGGGCUUGUUCGGUUAGCUCU   1768

0.0 Zea mays clone EL01N0443D02.d mRNA sequence NA coding protein psRNATarget
EZ097020.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:33   UUUAGGGCUUGUUCGGUUAGCUCU   56

0.0 TSA: Zea mays contig32675, mRNA sequence NA coding protein psRNATarget
NM_001174684.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:1197   UUUAGGGCUUGUUCGGUUAGCUCU   1220

0.0 Zea mays Elongation factor G-1 mitochondrial (pco134899), mRNA NA coding protein psRNATarget
BT062563.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:1197   UUUAGGGCUUGUUCGGUUAGCUCU   1220

0.0 Zea mays full-length cDNA clone ZM_BFb0314E20 mRNA, complete cds NA coding protein psRNATarget
EU956028.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:1448   UUUAGGGCUUGUUCGGUUAGCUCU   1471

0.0 Zea mays clone 1555850 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
BT062929.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:1537   UUUAGGGCUUGUUCGGUUAGCUCU   1560

0.0 Zea mays full-length cDNA clone ZM_BFc0008K15 mRNA, complete cds NA coding protein psRNATarget
AY109413.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||=||||||||||=||||||||||
targets:1549   CUUAGGGCUUGUUUGGUUAGCUCU   1572

1.5 Zea mays CL2362_1 mRNA sequence NA coding protein psRNATarget
EU964623.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:1421   UUUAGGGCUUGUUCGGUUAGCUCU   1444

0.0 Zea mays clone 280415 sorting nexin 1 mRNA, complete cds NA coding protein psRNATarget
BT039694.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:1638   UUUAGGGCUUGUUCGGUUAGCUCU   1661

0.0 Zea mays full-length cDNA clone ZM_BFc0039F21 mRNA, complete cds NA coding protein psRNATarget
NM_001147345.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:1638   UUUAGGGCUUGUUCGGUUAGCUCU   1661

0.0 Zea mays uncharacterized LOC100272892 (LOC100272892), mRNA NA coding protein psRNATarget
XM_008645434.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:2440   UUUAGGGCUUGUUCGGUUAGCUCU   2463

0.0 PREDICTED: Zea mays Elongation factor G-1 mitochondrial (pco134899), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020551710.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:3217   UUUAGGGCUUGUUCGGUUAGCUCU   3240

0.0 PREDICTED: Zea mays hypothetical protein (LOC100384203), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020551708.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||||||||||||||||||||
targets:4852   UUUAGGGCUUGUUCGGUUAGCUCU   4875

0.0 PREDICTED: Zea mays hypothetical protein (LOC100384203), transcript variant X1, mRNA NA coding protein psRNATarget
BT040208.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|=|||||||||||||||||||||
targets:1273   GUUAGGGCUUGUUCGGUUAGCUCU   1296

0.0 Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds NA coding protein psRNATarget
XM_020539702.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|=|||||||||||||||||||||
targets:2460   AUUAGGGCUUGUUCGGUUAGCUCU   2483

0.0 PREDICTED: Zea mays receptor kinase-like protein Xa21 (LOC103628995), mRNA NA coding protein psRNATarget
JB163448.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:7   CUAAGGGCUUGUUCGGUUAGCUCU   30

0.0 Sequence 1112 from Patent EP2559767 NA coding protein psRNATarget
LQ235117.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:7   CUAAGGGCUUGUUCGGUUAGCUCU   30

0.0 Sequence 1112 from Patent EP2985353 NA coding protein psRNATarget
HI402987.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:7   CUAAGGGCUUGUUCGGUUAGCUCU   30

0.0 Sequence 1112 from Patent EP2074227 NA coding protein psRNATarget
LQ237952.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:138   CUAAGGGCUUGUUCGGUUAGCUCU   161

0.0 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
LQ237952.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
HI405822.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:138   CUAAGGGCUUGUUCGGUUAGCUCU   161

0.0 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
HI405822.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
JB166283.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:138   CUAAGGGCUUGUUCGGUUAGCUCU   161

0.0 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
JB166283.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
EU944907.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:247   CUAAGGGCUUGUUCGGUUAGCUCU   270

0.0 Zea mays clone 235115 mRNA sequence NA coding protein psRNATarget
EU946280.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:596   CUAAGGGCUUGUUCGGUUAGCUCU   619

0.0 Zea mays clone 303329 mRNA sequence NA coding protein psRNATarget
NM_001149888.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:628   CUAAGGGCUUGUUCGGUUAGCUCU   651

0.0 Zea mays uncharacterized LOC100275986 (LOC100275986), mRNA NA coding protein psRNATarget
EU959169.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:628   CUAAGGGCUUGUUCGGUUAGCUCU   651

0.0 Zea mays clone 211416 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020541453.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:1940   CUAAGGGCUUGUUCGGUUAGCUCU   1963

0.0 PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X8, mRNA NA coding protein psRNATarget
XM_008654777.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:2309   CUAAGGGCUUGUUCGGUUAGCUCU   2332

0.0 PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008654776.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:2507   CUAAGGGCUUGUUCGGUUAGCUCU   2530

0.0 PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008654775.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||||||||||||||||||||
targets:2509   CUAAGGGCUUGUUCGGUUAGCUCU   2532

0.0 PREDICTED: Zea mays DNA-(apurinic or apyrimidinic site) lyase 2 (LOC103633096), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008651215.2
ncRNA:24   GAG-UCCCGAACAAGCCAAUCGAGA   1
  ||=-|||||||||||||||||||||
targets:362   CUUGAGGGCUUGUUCGGUUAGCUCU   386

0.0 PREDICTED: Zea mays putative domain of unknown function (DUF641) containing family protein (LOC103630129), mRNA NA coding protein psRNATarget
XM_008675283.2
ncRNA:24   GAGU----CCCGAACAAGCCAAUCGAGA   1
  ||||----||||||||||||||||||||
targets:2911   CUCAACUUGGGCUUGUUCGGUUAGCUCU   2938

0.0 PREDICTED: Zea mays probable inactive receptor kinase At4g23740 (LOC103649556), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008675284.2
ncRNA:24   GAGU----CCCGAACAAGCCAAUCGAGA   1
  ||||----||||||||||||||||||||
targets:2913   CUCAACUUGGGCUUGUUCGGUUAGCUCU   2940

0.0 PREDICTED: Zea mays probable inactive receptor kinase At4g23740 (LOC103649556), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008675282.2
ncRNA:24   GAGU----CCCGAACAAGCCAAUCGAGA   1
  ||||----||||||||||||||||||||
targets:2937   CUCAACUUGGGCUUGUUCGGUUAGCUCU   2964

0.0 PREDICTED: Zea mays probable inactive receptor kinase At4g23740 (LOC103649556), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020551224.1
ncRNA:24   GAGU----CCCGAACAAGCCAAUCGAGA   1
  ||||----||||||||||||||||||||
targets:3646   CUCAACUUGGGCUUGUUCGGUUAGCUCU   3673

0.0 PREDICTED: Zea mays probable inactive receptor kinase At4g23740 (LOC103649556), transcript variant X5, mRNA NA coding protein psRNATarget
AY111036.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||=|*|||||||||||||||||||
targets:81   CUUAAGGCUUGUUCGGUUAGCUCU   104

0.0 Zea mays CL1582_4 mRNA sequence NA coding protein psRNATarget
BT017852.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*|||||||||||||||||||||
targets:845   UUAAGGGCUUGUUCGGUUAGCUCU   868

0.0 Zea mays clone EL01N0511C01.c mRNA sequence NA coding protein psRNATarget
EU960828.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*|||||||||||||||||||||
targets:902   UUAAGGGCUUGUUCGGUUAGCUCU   925

0.0 Zea mays clone 228913 exosome complex exonuclease RRP41 mRNA, complete cds NA coding protein psRNATarget
BT068791.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*|||||||||||||||||||||
targets:1251   UUAAGGGCUUGUUCGGUUAGCUCU   1274

0.0 Zea mays full-length cDNA clone ZM_BFb0382D13 mRNA, complete cds NA coding protein psRNATarget
BT066364.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||=||*||||||||||||||||||
targets:1429   CUUAGUGCUUGUUCGGUUAGCUCU   1452

1.0 Zea mays full-length cDNA clone ZM_BFc0009H06 mRNA, complete cds NA coding protein psRNATarget
NM_001175812.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||=||*||||||||||||||||||
targets:1429   CUUAGUGCUUGUUCGGUUAGCUCU   1452

1.0 Zea mays uncharacterized LOC100383146 (LOC100383146), mRNA NA coding protein psRNATarget
XM_008669845.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*|||||||||||||||||||||
targets:1704   UUGAGGGCUUGUUCGGUUAGCUCU   1727

0.0 PREDICTED: Zea mays BcpLH protein (cl15365_1), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235222.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||||||||||||||||||||
targets:7   GUAAGGGCUUGUUCGGUUAGCUCU   30

0.0 Sequence 1217 from Patent EP2985353 NA coding protein psRNATarget
HI403092.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||||||||||||||||||||
targets:7   GUAAGGGCUUGUUCGGUUAGCUCU   30

0.0 Sequence 1217 from Patent EP2074227 NA coding protein psRNATarget
JB163553.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||||||||||||||||||||
targets:7   GUAAGGGCUUGUUCGGUUAGCUCU   30

0.0 Sequence 1217 from Patent EP2559767 NA coding protein psRNATarget
EU968099.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||||||||||||||||||||
targets:131   AUAAGGGCUUGUUCGGUUAGCUCU   154

0.0 Zea mays clone 314232 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008658927.2
ncRNA:24   GAGU-----CCCGAACAAGCCAAUCGAGA   1
  ||||-----|||||||||=||||||||||
targets:299   CUCAUCCAAGGGCUUGUUUGGUUAGCUCU   327

1.5 PREDICTED: Zea mays uncharacterized LOC103636575 (LOC103636575), mRNA NA coding protein psRNATarget
EU970939.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||||||||||||||||||||
targets:2013   AUAAGGGCUUGUUCGGUUAGCUCU   2036

0.0 Zea mays clone 354307 succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, mRNA, complete cds NA coding protein psRNATarget
JB166305.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3969 from Patent EP2559767 NA coding protein psRNATarget
LQ237974.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3969 from Patent EP2985353 NA coding protein psRNATarget
HI405844.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3969 from Patent EP2074227 NA coding protein psRNATarget
LQ237975.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3970 from Patent EP2985353 NA coding protein psRNATarget
HI405832.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3957 from Patent EP2074227 NA coding protein psRNATarget
LQ237955.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3950 from Patent EP2985353 NA coding protein psRNATarget
LQ237951.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3946 from Patent EP2985353 NA coding protein psRNATarget
LQ237970.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
JB166301.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
JB166293.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3957 from Patent EP2559767 NA coding protein psRNATarget
JB166282.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3946 from Patent EP2559767 NA coding protein psRNATarget
HI405835.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3960 from Patent EP2074227 NA coding protein psRNATarget
HI405821.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3946 from Patent EP2074227 NA coding protein psRNATarget
JB166296.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3960 from Patent EP2559767 NA coding protein psRNATarget
HI405881.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 4006 from Patent EP2074227 NA coding protein psRNATarget
JB166306.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3970 from Patent EP2559767 NA coding protein psRNATarget
LQ237965.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3960 from Patent EP2985353 NA coding protein psRNATarget
LQ237962.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3957 from Patent EP2985353 NA coding protein psRNATarget
JB166286.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3950 from Patent EP2559767 NA coding protein psRNATarget
HI405845.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3970 from Patent EP2074227 NA coding protein psRNATarget
LQ238011.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 4006 from Patent EP2985353 NA coding protein psRNATarget
HI405825.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3950 from Patent EP2074227 NA coding protein psRNATarget
HI405840.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
JB166342.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 4006 from Patent EP2559767 NA coding protein psRNATarget
JB166290.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3954 from Patent EP2559767 NA coding protein psRNATarget
LQ237963.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3958 from Patent EP2985353 NA coding protein psRNATarget
HI405829.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3954 from Patent EP2074227 NA coding protein psRNATarget
LQ237959.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3954 from Patent EP2985353 NA coding protein psRNATarget
JB166294.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3958 from Patent EP2559767 NA coding protein psRNATarget
HI405833.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||||||||||||||||
targets:1   AGGGCUUGUUCGGUUAGCUCU   21

0.0 Sequence 3958 from Patent EP2074227 NA coding protein psRNATarget
EU946745.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*||||=||||||||||||||||
targets:457   UUAAGGGUUUGUUCGGUUAGCUCU   480

1.0 Zea mays clone 323251 mRNA sequence NA coding protein psRNATarget
BT018592.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=||||||||||||||||*||||
targets:1003   UUUAGGGCUUGUUCGGUUAUCUCU   1026

1.5 Zea mays clone EL01N0447E06.d mRNA sequence NA coding protein psRNATarget
HI403266.1
ncRNA:24   GAG--UCCCGAACAAGCCAAUCGAGA   1
  |||--|||*|||||||||||||||||
targets:42   CUCUAAGGACUUGUUCGGUUAGCUCU   67

1.0 Sequence 1391 from Patent EP2074227 NA coding protein psRNATarget
JB163727.1
ncRNA:24   GAG--UCCCGAACAAGCCAAUCGAGA   1
  |||--|||*|||||||||||||||||
targets:42   CUCUAAGGACUUGUUCGGUUAGCUCU   67

1.0 Sequence 1391 from Patent EP2559767 NA coding protein psRNATarget
LQ235396.1
ncRNA:24   GAG--UCCCGAACAAGCCAAUCGAGA   1
  |||--|||*|||||||||||||||||
targets:42   CUCUAAGGACUUGUUCGGUUAGCUCU   67

1.0 Sequence 1391 from Patent EP2985353 NA coding protein psRNATarget
HI405887.1
ncRNA:23   AGUCCCGAACAAGCCAAUCGAGA   1
  |=||||||*||||||||||||||
targets:1   UUAGGGCUCGUUCGGUUAGCUCU   23

1.0 Sequence 4012 from Patent EP2074227 NA coding protein psRNATarget
JB166348.1
ncRNA:23   AGUCCCGAACAAGCCAAUCGAGA   1
  |=||||||*||||||||||||||
targets:1   UUAGGGCUCGUUCGGUUAGCUCU   23

1.0 Sequence 4012 from Patent EP2559767 NA coding protein psRNATarget
LQ238017.1
ncRNA:23   AGUCCCGAACAAGCCAAUCGAGA   1
  |=||||||*||||||||||||||
targets:1   UUAGGGCUCGUUCGGUUAGCUCU   23

1.0 Sequence 4012 from Patent EP2985353 NA coding protein psRNATarget
EU962683.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|=||||||*||||||||||||||
targets:1519   GUUAGGGCUCGUUCGGUUAGCUCU   1542

1.0 Zea mays clone 244714 mRNA sequence NA coding protein psRNATarget
XM_008680050.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|=||||||*||||||||||||||
targets:1642   GUUAGGGCUCGUUCGGUUAGCUCU   1665

1.0 PREDICTED: Zea mays sphingoid long-chain bases kinase 1 (LOC103653085), mRNA NA coding protein psRNATarget
XM_008658770.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|=||||||||||||||||*||||
targets:2756   GUUAGGGCUUGUUCGGUUACCUCU   2779

1.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008658769.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|=||||||||||||||||*||||
targets:2765   GUUAGGGCUUGUUCGGUUACCUCU   2788

1.5 PREDICTED: Zea mays G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 (LOC103636410), transcript variant X1, mRNA NA coding protein psRNATarget
EU957313.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||*|||||||||||||||||
targets:642   CUAAGGACUUGUUCGGUUAGCUCU   665

1.0 Zea mays clone 1588341 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001149687.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||*|||*|||||||||||||||||
targets:642   CUAAGGACUUGUUCGGUUAGCUCU   665

1.0 Zea mays uncharacterized LOC100275644 (LOC100275644), mRNA NA coding protein psRNATarget
XM_008666573.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=|||*=||||||||||||||||
targets:1285   UUUAGGCUUUGUUCGGUUAGCUCU   1308

2.0 PREDICTED: Zea mays putative acyl-CoA N-acyltransferases (NAT) family protein (LOC103643400), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001147267.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||-=|||=||||||||||||||||
targets:1449   CU-GGGGUUUGUUCGGUUAGCUCU   1471

1.0 Zea mays UDP-glycosyltransferase 91A1 (gpm263), mRNA NA coding protein psRNATarget
BT039499.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ||-=|||=||||||||||||||||
targets:1449   CU-GGGGUUUGUUCGGUUAGCUCU   1471

1.0 Zea mays full-length cDNA clone ZM_BFc0016E06 mRNA, complete cds NA coding protein psRNATarget
EZ107685.1
ncRNA:20   CCCGAACAAGCCAAUCGAGA   1
  ||||||||||||||||||||
targets:1   GGGCUUGUUCGGUUAGCUCU   20

0.0 TSA: Zea mays contig43343, mRNA sequence NA coding protein psRNATarget
LQ237966.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  =|||=||||||||||||||||
targets:1   GGGGUUUGUUCGGUUAGCUCU   21

1.0 Sequence 3961 from Patent EP2985353 NA coding protein psRNATarget
HI405836.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  =|||=||||||||||||||||
targets:1   GGGGUUUGUUCGGUUAGCUCU   21

1.0 Sequence 3961 from Patent EP2074227 NA coding protein psRNATarget
JB166297.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  =|||=||||||||||||||||
targets:1   GGGGUUUGUUCGGUUAGCUCU   21

1.0 Sequence 3961 from Patent EP2559767 NA coding protein psRNATarget
LQ238016.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*||||||||||||||||||*||
targets:1   UUAAGGGCUUGUUCGGUUAGCACU   24

1.5 Sequence 4011 from Patent EP2985353 NA coding protein psRNATarget
JB166347.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*||||||||||||||||||*||
targets:1   UUAAGGGCUUGUUCGGUUAGCACU   24

1.5 Sequence 4011 from Patent EP2559767 NA coding protein psRNATarget
HI405886.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*||||||||||||||||||*||
targets:1   UUAAGGGCUUGUUCGGUUAGCACU   24

1.5 Sequence 4011 from Patent EP2074227 NA coding protein psRNATarget
EZ055872.1
ncRNA:24   GAG---UCCCGAACAAGCCAAUCGAGA   1
  ||=---|||||||||||||||*|||||
targets:216   CUUGUAAGGGCUUGUUCGGUUUGCUCU   242

1.5 TSA: Zea mays contig56994, mRNA sequence NA coding protein psRNATarget
XM_008676887.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  ****||||||||||||||||||||
targets:2549   AGAUGGGCUUGUUCGGUUAGCUCU   2572

0.0 PREDICTED: Zea mays lectin-like receptor kinase 7 (LOC100281599), transcript variant X1, mRNA NA coding protein psRNATarget
EU942632.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|*||||||||||||||||||*||
targets:164   UUAAGGGCUUGUUCGGUUAGCACU   187

1.5 Zea mays clone 1525411 mRNA sequence NA coding protein psRNATarget
BT034334.1
ncRNA:24   GAG---UCCCGAACAAGCCAAUCGAGA   1
  ||=---|||*|||||||||||||||||
targets:859   CUUGUAAGGCCUUGUUCGGUUAGCUCU   885

1.0 Zea mays full-length cDNA clone ZM_BFb0129B13 mRNA, complete cds NA coding protein psRNATarget
JB166298.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  ||*||||||||||||||||||
targets:1   AGAGCUUGUUCGGUUAGCUCU   21

1.0 Sequence 3962 from Patent EP2559767 NA coding protein psRNATarget
HI405837.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  ||*||||||||||||||||||
targets:1   AGAGCUUGUUCGGUUAGCUCU   21

1.0 Sequence 3962 from Patent EP2074227 NA coding protein psRNATarget
LQ237967.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  ||*||||||||||||||||||
targets:1   AGAGCUUGUUCGGUUAGCUCU   21

1.0 Sequence 3962 from Patent EP2985353 NA coding protein psRNATarget
HI405851.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||*|||||||||||||
targets:1   AGGGCUUAUUCGGUUAGCUCU   21

1.0 Sequence 3976 from Patent EP2074227 NA coding protein psRNATarget
LQ237981.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||*|||||||||||||
targets:1   AGGGCUUAUUCGGUUAGCUCU   21

1.0 Sequence 3976 from Patent EP2985353 NA coding protein psRNATarget
LQ237953.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
JB166312.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||||||*|||||||||||||
targets:1   AGGGCUUAUUCGGUUAGCUCU   21

1.0 Sequence 3976 from Patent EP2559767 NA coding protein psRNATarget
JB166284.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
HI405880.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 4005 from Patent EP2074227 NA coding protein psRNATarget
JB166341.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 4005 from Patent EP2559767 NA coding protein psRNATarget
HI405823.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
LQ238010.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 4005 from Patent EP2985353 NA coding protein psRNATarget
HI407308.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 5433 from Patent EP2074227 NA coding protein psRNATarget
JB167769.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 5433 from Patent EP2559767 NA coding protein psRNATarget
LQ239438.1
ncRNA:21   UCCCGAACAAGCCAAUCGAGA   1
  |||*|||||||||||||||||
targets:1   AGGACUUGUUCGGUUAGCUCU   21

1.0 Sequence 5433 from Patent EP2985353 NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:3592   AUAAGGACUUGUUCGGUUAGCUCU   3615

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:3616   AUAAGGACUUGUUCGGUUAGCUCU   3639

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:3670   AUAAGGACUUGUUCGGUUAGCUCU   3693

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:3664   AUAAGGACUUGUUCGGUUAGCUCU   3687

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:3672   AUAAGGACUUGUUCGGUUAGCUCU   3695

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:3659   AUAAGGACUUGUUCGGUUAGCUCU   3682

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:3734   AUAAGGACUUGUUCGGUUAGCUCU   3757

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:4058   AUAAGGACUUGUUCGGUUAGCUCU   4081

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||||||
targets:4154   AUAAGGACUUGUUCGGUUAGCUCU   4177

1.0 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
BT018093.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  =|=||**|||||||||||||||||
targets:1059   UUUAGACCUUGUUCGGUUAGCUCU   1082

2.0 Zea mays clone EL01N0552E08.c mRNA sequence NA coding protein psRNATarget
EU946263.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||=|||
targets:479   GUAAGGUCUUGUUCGGUUAGUUCU   502

2.5 Zea mays clone 302506 mRNA sequence NA coding protein psRNATarget
BT018359.1
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||=|||
targets:1095   GUAAGGUCUUGUUCGGUUAGUUCU   1118

2.5 Zea mays clone EL01T0404H10.c mRNA sequence NA coding protein psRNATarget
XM_008667530.2
ncRNA:24   GAGUCCCGAACAAGCCAAUCGAGA   1
  *|*|||*|||||||||||||=|||
targets:2728   AUAAGGUCUUGUUCGGUUAGUUCU   2751

2.5 PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA NA coding protein psRNATarget
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